RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 OR5H15A6NDH6 313 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 OR5H1A6NKK0 313 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ZFP92A6NM28 416 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 A8MVM7 634 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 NDUFA2O43678 99 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SELLP14151 372 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SPINK2P20155 84 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 KIR3DL2P43630 455 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 PPIAP62937 165 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SLC10A1Q14973 349 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SP6Q3SY56 376 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF66Q6ZN08 573 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 BAGE3Q86Y29 109 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 BAGE2Q86Y30 109 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 PRSS35Q8N3Z0 413 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ADAD2Q8NCV1 583 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SNIP1Q8TAD8 396 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 TCTN2Q96GX1 697 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SCGB3A2Q96PL1 93 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 C1orf198Q9H425 327 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 CNTD2Q9H8S5 307 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 LAMP3Q9UQV4 416 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 A0A1W2PP11 408 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 UPK3AO75631 287 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 DIRAS3O95661 229 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 SNRPCP09234 159 aaKnown RBP10.65□□□□□ -0.7
HMGB1-206ENST00000405805 FZD5Q13467 585 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF528Q3MIS6 628 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 OR52N5Q8NH56 324 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 SLC25A28Q96A46 364 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 SLC46A1Q96NT5 459 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 EXOSC3Q9NQT5 275 aaKnown RBP10.65□□□□□ -0.7
HMGB1-206ENST00000405805 ROS1P08922 2347 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 LDLRAD4O15165 306 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 XRCC2O43543 280 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 FCGR2AP12318 317 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF16P17020 682 aaPredicted RBP10.65□□□□□ -0.7
HMGB1-206ENST00000405805 POLR2HP52434 150 aaKnown RBP10.65□□□□□ -0.7
HMGB1-206ENST00000405805 SLC26A5P58743 744 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 MRPS21P82921 87 aaKnown RBP10.65□□□□□ -0.7
HMGB1-206ENST00000405805 C9orf135Q5VTT2 229 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 NSUN5P2Q63ZY6 315 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 SLAMF6Q96DU3 332 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 TMPRSS13Q9BYE2 586 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 DEFB126Q9BYW3 111 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 OR14J1Q9UGF5 321 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 HSF4Q9ULV5 492 aa10.65□□□□□ -0.7
HMGB1-206ENST00000405805 A0A1W2PPQ1 181 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 CTDSPLO15194 276 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 IL11P20809 199 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 RSPO4Q2I0M5 234 aaPredicted RBP10.65□□□□□ -0.71
HMGB1-206ENST00000405805 SPNS3Q6ZMD2 512 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 SLC22A24Q8N4F4 322 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 FNDC9Q8TBE3 224 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 C22orf15Q8WYQ4 148 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 ADIPOR1Q96A54 375 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 GFI1Q99684 422 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 NAA11Q9BSU3 229 aaPredicted RBP10.65□□□□□ -0.71
HMGB1-206ENST00000405805 DDA1Q9BW61 102 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 ALX4Q9H161 411 aaPredicted RBP10.65□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF576Q9H609 170 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 CHST11Q9NPF2 352 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 GPR84Q9NQS5 396 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 FGF21Q9NSA1 209 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 ANKRD10Q9NXR5 420 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 PCDHGA1Q9Y5H4 931 aa10.65□□□□□ -0.71
HMGB1-206ENST00000405805 GPR179Q6PRD1 2367 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 ITGB2P05107 769 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 PPICP45877 212 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 TLE1Q04724 770 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 LINC01590Q5TEZ4 76 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 SULF2Q8IWU5 870 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 OR9K2Q8NGE7 335 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 SCGB1C1Q8TD33 95 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 FOXQ1Q9C009 403 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 RAB22AQ9UL26 194 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 SLC5A6Q9Y289 635 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 TRBV11-1A0A0K0K1C0 115 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF749O43361 778 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 RPL23AP62750 156 aaKnown RBP10.64□□□□□ -0.71
HMGB1-206ENST00000405805 EGR3Q06889 387 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 TMPRSS7Q7RTY8 843 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 LYG2Q86SG7 212 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 ASB13Q8WXK3 278 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 HOXB13Q92826 284 aaPredicted RBP10.64□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF442Q9H7R0 627 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.64□□□□□ -0.71
HMGB1-206ENST00000405805 PAM16Q9Y3D7 125 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 DOCK8Q8NF50 2099 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 MASP2O00187 686 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 CYB5R3P00387 301 aaPredicted RBP10.64□□□□□ -0.71
HMGB1-206ENST00000405805 APOA2P02652 100 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 LCATP04180 440 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 GLRA1P23415 457 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 CASRP41180 1078 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 SULT1A1P50225 295 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 IQCJQ1A5X6 159 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 ASB5Q8WWX0 329 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 FGF11Q92914 225 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 NICN1Q9BSH3 213 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms