RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CRIP3Q6Q6R5 217 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 SSC4DQ8WTU2 575 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 PECRQ9BY49 303 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 SLC2A4RGQ9NR83 387 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 C14orf166Q9Y224 244 aaKnown RBP14.41□□□□□ -0.1
SDC4-201ENST00000372733 LSM5Q9Y4Y9 91 aaKnown RBP14.41□□□□□ -0.1
SDC4-201ENST00000372733 MED12Q93074 2177 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 A0A1W2PNR3 127 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 IGHG1P01857 330 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 ECH1Q13011 328 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 LCN10Q6JVE6 187 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 A0A1W2PPE3 182 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 FOXI3A8MTJ6 420 aaPredicted RBP14.4□□□□□ -0.1
SDC4-201ENST00000372733 C1orf196B1AJZ1 125 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 LINC00587B1AMM8 73 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 TRAF3IP2O43734 574 aaPredicted RBP14.4□□□□□ -0.1
SDC4-201ENST00000372733 SCGB1D2O95969 90 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 KLK2P20151 261 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 TMEM33P57088 247 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 CFHR1Q03591 330 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 KISS1Q15726 138 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 FAM89BQ8N5H3 189 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 C15orf54Q8N8G6 183 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 FNDC9Q8TBE3 224 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 MRPL24Q96A35 216 aaKnown RBP14.4□□□□□ -0.1
SDC4-201ENST00000372733 OR5B2Q96R09 309 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 HDHD3Q9BSH5 251 aaPredicted RBP14.4□□□□□ -0.1
SDC4-201ENST00000372733 C1orf123Q9NWV4 160 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 AMDHD2Q9Y303 409 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 A0A1B0GX78 115 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 SHISA7A6NL88 538 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 STMND1H3BQB6 276 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 SGCEO43556 437 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 RAMP1O60894 148 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 CCL1P22362 96 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 DOK3Q7L591 496 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 C17orf82Q86X59 251 aaPredicted RBP14.4□□□□□ -0.1
SDC4-201ENST00000372733 DTX1Q86Y01 620 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 OR14K1Q8NGZ2 314 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 ERGIC1Q969X5 290 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 ISOC2Q96AB3 205 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 BSCL2Q96G97 398 aaPredicted RBP14.4□□□□□ -0.1
SDC4-201ENST00000372733 KLRF1Q9NZS2 232 aa14.4□□□□□ -0.1
SDC4-201ENST00000372733 MCTS1Q9ULC4 181 aaKnown RBP14.4□□□□□ -0.1
SDC4-201ENST00000372733 A6NLC8 198 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 NME2P1O60361 137 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 DEDDO75618 318 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 ZNF44P15621 663 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 SMCO1Q147U7 214 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 AWAT1Q58HT5 328 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 APCDD1LQ8NCL9 501 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 SEMA6DQ8NFY4 1073 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 MRPL38Q96DV4 380 aaKnown RBP14.39□□□□□ -0.11
SDC4-201ENST00000372733 SHDQ96IW2 340 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 PRRX2Q99811 253 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 EGLN1Q9GZT9 426 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 ELL3Q9HB65 397 aaPredicted RBP14.39□□□□□ -0.11
SDC4-201ENST00000372733 TIMM10BQ9Y5J6 103 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 KPTNQ9Y664 436 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 DHRS7CA6NNS2 312 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 SNRNP70P08621 437 aaKnown RBP14.39□□□□□ -0.11
SDC4-201ENST00000372733 ZNF806P0C7X5 589 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 DAOP14920 347 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 EN2P19622 333 aaPredicted RBP14.39□□□□□ -0.11
SDC4-201ENST00000372733 SMAD4Q13485 552 aaKnown RBP14.39□□□□□ -0.11
SDC4-201ENST00000372733 C14orf28Q4W4Y0 310 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 MIDNQ504T8 468 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 POC1BQ8TC44 478 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 LYZL4Q96KX0 146 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 ZNF2Q9BSG1 426 aaPredicted RBP14.39□□□□□ -0.11
SDC4-201ENST00000372733 C20orf24Q9BUV8 137 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 BRWD1Q9NSI6 2320 aa14.39□□□□□ -0.11
SDC4-201ENST00000372733 RTTNQ86VV8 2226 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 EXPH5Q8NEV8 1989 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 C5orf52A6NGY3 159 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 GAPDHP04406 335 aaKnown RBP14.38□□□□□ -0.11
SDC4-201ENST00000372733 MYF5P13349 255 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 PAX6P26367 422 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 THBS4P35443 961 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 ZNF41P51814 821 aaPredicted RBP14.38□□□□□ -0.11
SDC4-201ENST00000372733 SUMO3P55854 103 aaPredicted RBP14.38□□□□□ -0.11
SDC4-201ENST00000372733 SHHQ15465 462 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 RSPO4Q2I0M5 234 aaPredicted RBP14.38□□□□□ -0.11
SDC4-201ENST00000372733 EIF2S3LQ2VIR3 472 aaKnown RBP14.38□□□□□ -0.11
SDC4-201ENST00000372733 GGNBP1Q5YKI7 109 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 SLC25A47Q6Q0C1 308 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 C6orf201Q7Z4U5 140 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 OR9K2Q8NGE7 335 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 PPP4R1LQ9P1A2 415 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 PISDQ9UG56 409 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 A0A1W2PPH5 198 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 JTBO76095 146 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 FAHP16930 419 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 ZNF84P51523 738 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 ZNF616Q08AN1 781 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 PLPPR5Q32ZL2 321 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 SULF2Q8IWU5 870 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 PGAM5Q96HS1 289 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 IP6K3Q96PC2 410 aa14.38□□□□□ -0.11
SDC4-201ENST00000372733 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms