RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PRKACBP22694 351 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 CEACAM8P31997 349 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-202ENST00000372405 RANBP1P43487 201 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 MALLQ13021 153 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 PCGF3Q3KNV8 242 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 PLAC9Q5JTB6 97 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 RSBN1Q5VWQ0 802 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-202ENST00000372405 ZNF474Q6S9Z5 364 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-202ENST00000372405 MOB3CQ70IA8 216 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 MRPL21Q7Z2W9 205 aaKnown RBP11.87□□□□□ -0.51
PTPRF-202ENST00000372405 DOLPP1Q86YN1 238 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 OR10R2Q8NGX6 335 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 CHAC2Q8WUX2 184 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 C1QTNF6Q9BXI9 259 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 GHRLQ9UBU3 117 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 CENPXA8MT69 81 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 C1QTNF9BB2RNN3 333 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 SPRY1O43609 319 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-202ENST00000372405 ANGPTL7O43827 346 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 ICMTO60725 284 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 LILRA1O75019 489 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 IGKV3-15P01624 115 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 C1QTNF9P0C862 333 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 GLI4P10075 376 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 GNB3P16520 340 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 RBP2P50120 134 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 TMEM50BP56557 158 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 TATDN3Q17R31 274 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 TBC1D28Q2M2D7 210 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 PLCXD3Q63HM9 321 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 OLFML2AQ68BL7 652 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 Q6ZTK2 550 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 FAM89BQ8N5H3 189 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 HPSE2Q8WWQ2 592 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 CREB3L1Q96BA8 519 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 CACNG6Q9BXT2 260 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 SELENOIQ9C0D9 397 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 KCNK7Q9Y2U2 307 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 CACNA1AO00555 2505 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 IGKV1-12A0A0C4DH73 117 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 FOXI3A8MTJ6 420 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-202ENST00000372405 SULT1C2O00338 296 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 PLATP00750 562 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 IGKV1D-12P01611 117 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 TCRBP04435 133 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 LPLP06858 475 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 MELTFP08582 738 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 CBR1P16152 277 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 MGMTP16455 207 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 SERPINA2P20848 420 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 RAB25P57735 213 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 AP3S2P59780 193 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 RPS27AP62979 156 aaKnown RBP11.86□□□□□ -0.51
PTPRF-202ENST00000372405 P2RY6Q15077 328 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 CDNFQ49AH0 187 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 SPATA46Q5T0L3 261 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 LHFPL2Q6ZUX7 228 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 CDH24Q86UP0 819 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 OR4D10Q8NGI6 311 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 BORCS8Q96FH0 119 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 NUDT16L1Q9BRJ7 211 aaKnown RBP11.86□□□□□ -0.51
PTPRF-202ENST00000372405 PAPOLGQ9BWT3 736 aaKnown RBP11.86□□□□□ -0.51
PTPRF-202ENST00000372405 DPAGT1Q9H3H5 408 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 NUDT15Q9NV35 164 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 ASF1BQ9NVP2 202 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 ESPL1Q14674 2120 aa11.86□□□□□ -0.51
PTPRF-202ENST00000372405 CD300LBA8K4G0 201 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 SMPD2O60906 423 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 CST4P01036 141 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 HNRNPCP07910 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
PTPRF-202ENST00000372405 GSTT2BP0CG30 244 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 TMEM225BP0DP42 221 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 FUT6P51993 359 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 ERVS71-1P61550 626 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 PRDX4Q13162 271 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 SFRP4Q6FHJ7 346 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-202ENST00000372405 ASCL4Q6XD76 172 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 BEND4Q6ZU67 534 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 CALHM1Q8IU99 346 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 CHST4Q8NCG5 386 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 BHLHE23Q8NDY6 225 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 DVL3Q92997 716 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-202ENST00000372405 CST11Q9H112 138 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 SCPEP1Q9HB40 452 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 TINAGQ9UJW2 476 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 ZNF835Q9Y2P0 537 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 TRAV6A0A075B6T7 132 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 INMT-MINDY4F8WBC2 141 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 CHRM2P08172 466 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 HOXD4P09016 255 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-202ENST00000372405 EIF2S3LQ2VIR3 472 aaKnown RBP11.85□□□□□ -0.51
PTPRF-202ENST00000372405 GFRALQ6UXV0 394 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 BHLHA15Q7RTS1 189 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-202ENST00000372405 C17orf78Q8N4C9 275 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 OR4C16Q8NGL9 310 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 NUDCD2Q8WVJ2 157 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 HPS1Q92902 700 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 TECTBQ96PL2 329 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 TP63Q9H3D4 680 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-202ENST00000372405 OPA3Q9H6K4 179 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms