RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 FOXRED2Q8IWF2 684 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 BPIFB2Q8N4F0 458 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 MRPS18BQ9Y676 258 aaKnown RBP12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 FREM1Q5H8C1 2179 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 DIDO1Q9BTC0 2240 aaKnown RBP12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 IGLV1-36A0A0B4J1U3 117 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF208O43345 1280 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 DXOO77932 396 aaKnown RBP12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 PMS2P2O95744 297 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 ABHD16AO95870 558 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 MT-ATP6P00846 226 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 CRABP1P29762 137 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 VASH2Q86V25 355 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 NAA11Q9BSU3 229 aaPredicted RBP12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 PKDREJQ9NTG1 2253 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 LAP3P28838 519 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 MPPED2Q15777 294 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 RAB11BQ15907 218 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 ATPAF1Q5TC12 328 aaPredicted RBP12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 UQCC3Q6UW78 93 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 TMPPEQ6ZT21 453 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 WDSUB1Q8N9V3 476 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 OR5M8Q8NGP6 311 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 ROBO4Q8WZ75 1007 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 SLAMF6Q96DU3 332 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 GPX7Q96SL4 187 aaPredicted RBP12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 BANF2Q9H503 90 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 TAS2R8Q9NYW2 309 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 UPB1Q9UBR1 384 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 A0A0G2JMM0 328 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 A0A1W2PPB8 328 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 A0A1W2PRS3 328 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 ANKUB1A6NFN9 424 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 TMEM212A6NML5 194 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 KIR3DP1A8MWS1 328 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 TNFSF11O14788 317 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 SNRNP70P08621 437 aaKnown RBP12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 GALNSP34059 522 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 ID4P47928 161 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 F2RL1P55085 397 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 SLC22A6Q4U2R8 563 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 OR52N5Q8NH56 324 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 PFDN5Q99471 154 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 S100A13Q99584 98 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 CHMP1AQ9HD42 196 aaPredicted RBP12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 PRR13Q9NZ81 148 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 NCOR2Q9Y618 2525 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 C5orf63A6NC05 138 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 MUC1P15941 1255 aaPredicted RBP12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 MOGAT2Q3SYC2 334 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 HES3Q5TGS1 186 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF441Q8N8Z8 693 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 CLEC1AQ8NC01 280 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 EDARADDQ8WWZ3 215 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF837Q96EG3 531 aaPredicted RBP12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 CMTM3Q96MX0 182 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF385AQ96PM9 386 aaKnown RBP12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 CSAG2Q9Y5P2 127 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 HS3ST3B1Q9Y662 390 aa12.8□□□□□ -0.36
SHROOM1-208ENST00000617339 A0A1W2PP11 408 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 SMIM6P0DI80 62 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 PNLIPP16233 465 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 MECP2P51608 486 aaKnown RBP12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 NCMAPQ5T1S8 102 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 DNM1P34Q6PK57 102 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 POC1BQ8TC44 478 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 ASB5Q8WWX0 329 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 SLC6A7Q99884 636 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 POTEKPQ9BYX7 375 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 NCOA6Q14686 2063 aaPredicted RBP12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 LIPT2A6NK58 231 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 YKT6O15498 198 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 NME2P22392 152 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 CD80P33681 288 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 APOBEC1P41238 236 aaKnown RBP12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 RASGEF1BQ0VAM2 473 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 CDNFQ49AH0 187 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF684Q5T5D7 378 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 SPINK14Q6IE38 97 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF519Q8TB69 540 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 LIN37Q96GY3 246 aaPredicted RBP12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 P4HTMQ9NXG6 502 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 HHLA2Q9UM44 414 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 IGF2RP11717 2491 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 SPTBN4Q9H254 2564 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 A6NLC8 198 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 NPIPB7O75200 414 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 HTR3BO95264 441 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 DBHP09172 617 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 SP9P0CG40 484 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 RNF224P0DH78 156 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 ARG2P78540 354 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 OR5AP2Q8NGF4 316 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 OR52N4Q8NGI2 321 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 MAFIPQ8WZ33 124 aa12.79□□□□□ -0.36
SHROOM1-208ENST00000617339 hCG_1809904A0A1W2PP81 198 aa12.78□□□□□ -0.36
SHROOM1-208ENST00000617339 A0A1W2PR64 198 aa12.78□□□□□ -0.36
SHROOM1-208ENST00000617339 A0A1W2PRV1 198 aa12.78□□□□□ -0.36
SHROOM1-208ENST00000617339 FTCDNL1E5RQL4 147 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms