RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 RPL3LQ92901 407 aaKnown RBP12.41□□□□□ -0.42
MCF2L-228ENST00000487354 SLAMF6Q96DU3 332 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 OR4F4Q96R69 305 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 FAM234AQ9H0X4 552 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 SF3B6Q9Y3B4 125 aaKnown RBP12.41□□□□□ -0.42
MCF2L-228ENST00000487354 N6AMT1Q9Y5N5 214 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 EPPK1P58107 5090 aaKnown RBP12.4□□□□□ -0.42
MCF2L-228ENST00000487354 IGKV1D-17A0A075B6S4 117 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 A0A1W2PQ09 198 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 WI2-2373I1.2A0A1W2PRP0 233 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 NKX6-3A6NJ46 265 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 SEMG1P04279 462 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 ZNF823P16415 610 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 NAA10P41227 235 aaPredicted RBP12.4□□□□□ -0.42
MCF2L-228ENST00000487354 GSSP48637 474 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 SLC7A2P52569 658 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 PGBD2Q6P3X8 592 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 ARPINQ7Z6K5 226 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 HPSE2Q8WWQ2 592 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 REEP6Q96HR9 211 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 NKX3-1Q99801 234 aaPredicted RBP12.4□□□□□ -0.42
MCF2L-228ENST00000487354 C19orf12Q9NSK7 152 aa12.4□□□□□ -0.42
MCF2L-228ENST00000487354 VGLL3A8MV65 326 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 AKR7A2O43488 359 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 IDH3BO43837 385 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 NDUFB7P17568 137 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 ACKR3P25106 362 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 CX3CR1P49238 355 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 GSK3AP49840 483 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 ERVFRD-1P60508 538 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 SF3A3Q12874 501 aaKnown RBP eCLIP12.39□□□□□ -0.431e-6■■■■■ 28.3
MCF2L-228ENST00000487354 TMEM95Q3KNT9 176 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 FAM76BQ5HYJ3 339 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 LDLRAD2Q5SZI1 272 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 LHFPL4Q7Z7J7 247 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 ZNRF1Q8ND25 227 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 PROKR2Q8NFJ6 384 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 OR5D13Q8NGL4 314 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 PAPOLGQ9BWT3 736 aaKnown RBP12.39□□□□□ -0.43
MCF2L-228ENST00000487354 CDCA4Q9BXL8 241 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 AP3M1Q9Y2T2 418 aa12.39□□□□□ -0.43
MCF2L-228ENST00000487354 SACSQ9NZJ4 4579 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 A6NDX4 124 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 FAM90A8PA6NJQ4 464 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 ZNF878C9JN71 531 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 GSTA4O15217 222 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 TBX1O43435 398 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 SPARCP09486 303 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 ENTPD1P49961 510 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 ZNF511Q8NB15 262 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 OR4C15Q8NGM1 316 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 OR5P3Q8WZ94 311 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 FAM162AQ96A26 154 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 MED30Q96HR3 178 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 WWC2-AS2Q96NR7 200 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 NSRP1Q9H0G5 558 aaKnown RBP12.38□□□□□ -0.43
MCF2L-228ENST00000487354 EGLN3Q9H6Z9 239 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 KRCC1Q9NPI7 259 aaPredicted RBP12.38□□□□□ -0.43
MCF2L-228ENST00000487354 CENPMQ9NSP4 180 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 NLKQ9UBE8 527 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 CD300AQ9UGN4 299 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 TCF19Q9Y242 345 aa12.38□□□□□ -0.43
MCF2L-228ENST00000487354 TRBV23-1A0A0A0MS06 115 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 DHRS12A0PJE2 317 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 OR2AT4A6NND4 320 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 H0YAE9 185 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 RHBDL1O75783 438 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 PSG2P11465 335 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 RAB13P51153 203 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 BLMHQ13867 455 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 TIGD6Q17RP2 521 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 TCTEX1D4Q5JR98 221 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 TEX30Q5JUR7 227 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 TMEM219Q86XT9 240 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 FAM185AQ8N0U4 392 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 SLC37A3Q8NCC5 494 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 OR8D4Q8NGM9 314 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 OR2T4Q8NH00 348 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 OR5K1Q8NHB7 308 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 AMELYQ99218 206 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 NMNAT2Q9BZQ4 307 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 DCAF13Q9NV06 445 aaKnown RBP12.37□□□□□ -0.43
MCF2L-228ENST00000487354 MRGBPQ9NV56 204 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 ABCD2Q9UBJ2 740 aa12.37□□□□□ -0.43
MCF2L-228ENST00000487354 FAM32AQ9Y421 112 aaKnown RBP12.37□□□□□ -0.43
MCF2L-228ENST00000487354 TMEM210A6NLX4 147 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 ZNF593O00488 134 aaPredicted RBP12.36□□□□□ -0.43
MCF2L-228ENST00000487354 GYPBP06028 91 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 ANXA2P07355 339 aaKnown RBP12.36□□□□□ -0.43
MCF2L-228ENST00000487354 CLUP10909 449 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 CD33P20138 364 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 MSX2P35548 267 aaPredicted RBP12.36□□□□□ -0.43
MCF2L-228ENST00000487354 ZNF121P58317 390 aaPredicted RBP12.36□□□□□ -0.43
MCF2L-228ENST00000487354 CD83Q01151 205 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 IL5RAQ01344 420 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 SPIBQ01892 262 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 PRDX4Q13162 271 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 CNN3Q15417 329 aaKnown RBP12.36□□□□□ -0.43
MCF2L-228ENST00000487354 PLA1AQ53H76 456 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 LINC01590Q5TEZ4 76 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 700.8 ms