RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CCDC54Q8NEL0 328 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 OR5L1Q8NGL2 311 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 RGP1Q92546 391 aaPredicted RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 RPL3LQ92901 407 aaKnown RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 REEP6Q96HR9 211 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 FAM71F1Q96KD3 344 aaPredicted RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 OR14A2Q96R54 314 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 SOX7Q9BT81 388 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 OR51B6Q9H340 312 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 GPR84Q9NQS5 396 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 SF3B6Q9Y3B4 125 aaKnown RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 CEPT1Q9Y6K0 416 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 PMF1-BGLAPU3KQ54 211 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 TRBV5-5A0A0J9YX44 114 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 LOC100289279A0A1B0GTE1 492 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF879B4DU55 563 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 H3BSA7 217 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF701M0R085 212 aaPredicted RBP10.37□□□□□ -0.75
PTPRF-208ENST00000437607 SLC22A1O15245 554 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 GPX5O75715 221 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 DHRS3O75911 302 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 ARL6IP5O75915 188 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 FAM157BP0CG42 384 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 CCL1P22362 96 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 WNT5AP41221 380 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 CRYBB2P43320 205 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 SOX2P48431 317 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 PDLIM4P50479 330 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 RPS23P62266 143 aaKnown RBP10.37□□□□□ -0.75
PTPRF-208ENST00000437607 RSPO1Q2MKA7 263 aaPredicted RBP10.37□□□□□ -0.75
PTPRF-208ENST00000437607 ACSM3Q53FZ2 586 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 GLYATL3Q5SZD4 288 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 C22orf42Q6IC83 251 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 FAM166AQ6J272 317 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 CD200R1LQ6Q8B3 271 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 COLCA1Q6ZS62 124 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 NAA40Q86UY6 237 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF101Q8IZC7 436 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 RDH10Q8IZV5 341 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 OR10AC1Q8NH08 325 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 OR2AE1Q8NHA4 323 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 PHYHIPQ92561 330 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 KCTD7Q96MP8 289 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 PIMREGQ9BSJ6 248 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 TBCCD1Q9NVR7 557 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 PTTG3PQ9NZH4 202 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 KCNS2Q9ULS6 477 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 SPEF1Q9Y4P9 236 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 CMYA5Q8N3K9 4069 aa10.37□□□□□ -0.75
PTPRF-208ENST00000437607 A6NHS1 94 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 H3BMQ9 156 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 NDUFS8O00217 210 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 ICMTO60725 284 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 BMP4P12644 408 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 ANOS1P23352 680 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 FGF9P31371 208 aaPredicted RBP10.36□□□□□ -0.75
PTPRF-208ENST00000437607 VBP1P61758 197 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 PPP1CBP62140 327 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 NCS1P62166 190 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 SNTB2Q13425 540 aaKnown RBP10.36□□□□□ -0.75
PTPRF-208ENST00000437607 INSL4Q14641 139 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 HSD17B12Q53GQ0 312 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 ZMAT1Q5H9K5 638 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 CEACAM19Q7Z692 300 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 OR51A4Q8NGJ6 313 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 PPP1R14AQ96A00 147 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 TMEM106AQ96A25 262 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 C12orf43Q96C57 262 aaKnown RBP10.36□□□□□ -0.75
PTPRF-208ENST00000437607 DERL3Q96Q80 235 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 CENPOQ9BU64 300 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 BCL2L14Q9BZR8 327 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 SLITRK2Q9H156 845 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 TXNL4BQ9NX01 149 aaKnown RBP10.36□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF319Q9P2F9 582 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 CKLFQ9UBR5 152 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 PKD1L1Q8TDX9 2849 aa10.36□□□□□ -0.75
PTPRF-208ENST00000437607 hCG_38984A0A1B0GV85 526 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 LOC390937A0A1W2PQ73 354 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 C5orf63A6NC05 138 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 DHRS7CA6NNS2 312 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 SC5DO75845 299 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 IGLV3-1P01715 115 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 UCHL1P09936 223 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 FSTP19883 344 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 CALRP27797 417 aaKnown RBP10.35□□□□□ -0.75
PTPRF-208ENST00000437607 CALCRP30988 508 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 GNALP38405 381 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 RAD52P43351 418 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 SERPINB10P48595 397 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 RPS11P62280 158 aaKnown RBP eCLIP10.35□□□□□ -0.75
PTPRF-208ENST00000437607 PPP3R1P63098 170 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF92Q03936 586 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 CTF1Q16619 201 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 SPATA46Q5T0L3 261 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 FOXB2Q5VYV0 432 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 USP43Q70EL4 1123 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 PGAP1Q75T13 922 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 C1orf174Q8IYL3 243 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 OR1J1Q8NGS3 322 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 SPSB4Q96A44 273 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms