RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PAPD5Q8NDF8 572 aaKnown RBP16.15■□□□□ 0.18
LIME1-201ENST00000309546 FAM81AQ8TBF8 368 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 GATAD2BQ8WXI9 593 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 RPL3LQ92901 407 aaKnown RBP16.15■□□□□ 0.18
LIME1-201ENST00000309546 LHX4Q969G2 390 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 LYZL4Q96KX0 146 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 SIRPDQ9H106 197 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 NIPAL2Q9H841 368 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 UNKLQ9H9P5 680 aaKnown RBP16.15■□□□□ 0.18
LIME1-201ENST00000309546 KAAG1Q9UBP8 84 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 DNAJB11Q9UBS4 358 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 CENPVL3A0A0U1RRI6 287 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 SRRM5B3KS81 715 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.14■□□□□ 0.17
LIME1-201ENST00000309546 ECDO95905 644 aaPredicted RBP16.14■□□□□ 0.17
LIME1-201ENST00000309546 ALOX5APP20292 161 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 OMGP23515 440 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 CRISP1P54107 249 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 BPIFB3P59826 476 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 IL13RA1P78552 427 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 IKZF1Q13422 519 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 SHISA2Q6UWI4 295 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 PDZD9Q8IXQ8 264 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 ZDHHC23Q8IYP9 409 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 OR5T2Q8NGG2 359 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 DNAJC9Q8WXX5 260 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 RNF170Q96K19 258 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 TLNRD1Q9H1K6 362 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 ABCB9Q9NP78 766 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 SNTG1Q9NSN8 517 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 ONECUT1Q9UBC0 465 aa16.14■□□□□ 0.17
LIME1-201ENST00000309546 RPUSD1Q9UJJ7 312 aaKnown RBP16.14■□□□□ 0.17
LIME1-201ENST00000309546 CCDC182A6NF36 153 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 TMEM210A6NLX4 147 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 CST4P01036 141 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 PDCD1Q15116 288 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 KCTD18Q6PI47 426 aaPredicted RBP16.13■□□□□ 0.17
LIME1-201ENST00000309546 SCCPDHQ8NBX0 429 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 HPSE2Q8WWQ2 592 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 OR5P3Q8WZ94 311 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 C12orf43Q96C57 262 aaKnown RBP16.13■□□□□ 0.17
LIME1-201ENST00000309546 YIPF3Q9GZM5 350 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 FGF23Q9GZV9 251 aaPredicted RBP16.13■□□□□ 0.17
LIME1-201ENST00000309546 WDR13Q9H1Z4 485 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 ZNF391Q9UJN7 358 aa16.13■□□□□ 0.17
LIME1-201ENST00000309546 IGHV1-69DA0A0B4J2H0 117 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 TMEM269A0A1B0GVZ9 245 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 NKX6-3A6NJ46 265 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 NDUFB3O43676 98 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 IGHV1-69P01742 117 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 SELLP14151 372 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 DAPP51397 102 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 PTGES3Q15185 160 aaKnown RBP16.12■□□□□ 0.17
LIME1-201ENST00000309546 STUMQ69YW2 141 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 FIP1L1Q6UN15 594 aaKnown RBP16.12■□□□□ 0.17
LIME1-201ENST00000309546 Q6YL49 198 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 TMIGD2Q96BF3 282 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 NRBF2Q96F24 287 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 HIST1H2AAQ96QV6 131 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 TEAD3Q99594 435 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 CADM1Q9BY67 442 aaKnown RBP16.12■□□□□ 0.17
LIME1-201ENST00000309546 MROQ9BYG7 248 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 PRRG3Q9BZD7 231 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 PRDM13Q9H4Q3 707 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 CNTD2Q9H8S5 307 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 NOX4Q9NPH5 578 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 ACOXLQ9NUZ1 547 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 HAO2Q9NYQ3 351 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 IKZF2Q9UKS7 526 aa16.12■□□□□ 0.17
LIME1-201ENST00000309546 ZNF816-ZNF321PA0A0X1KG74 233 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 M0R129 80 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 AKR7A2O43488 359 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 PRKYO43930 277 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 TFF1P04155 84 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 CRYBA1P05813 215 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 MELTFP08582 738 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 MDKP21741 143 aaPredicted RBP16.11■□□□□ 0.17
LIME1-201ENST00000309546 MAP2K3P46734 347 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 GPM6AP51674 278 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 C11orf91Q3C1V1 193 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 LRRC10Q5BKY1 277 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 CEP78Q5JTW2 689 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 FAHD1Q6P587 224 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 VMO1Q7Z5L0 202 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 OR10Z1Q8NGY1 313 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 OR5K1Q8NHB7 308 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 H1FXQ92522 213 aaKnown RBP16.11■□□□□ 0.17
LIME1-201ENST00000309546 FAM71F1Q96KD3 344 aaPredicted RBP16.11■□□□□ 0.17
LIME1-201ENST00000309546 CNN2Q99439 309 aaKnown RBP16.11■□□□□ 0.17
LIME1-201ENST00000309546 KRT84Q9NSB2 600 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 FAM206AQ9NX38 181 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 GTF2A1LQ9UNN4 478 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 COPS3Q9UNS2 423 aa16.11■□□□□ 0.17
LIME1-201ENST00000309546 FAM181BA6NEQ2 426 aa16.1■□□□□ 0.17
LIME1-201ENST00000309546 PRR32B1ATL7 298 aa16.1■□□□□ 0.17
LIME1-201ENST00000309546 GSC2O15499 205 aa16.1■□□□□ 0.17
LIME1-201ENST00000309546 MITFO75030 526 aaPredicted RBP16.1■□□□□ 0.17
LIME1-201ENST00000309546 AMY2BP19961 511 aa16.1■□□□□ 0.17
LIME1-201ENST00000309546 ZNF829Q3KNS6 432 aaPredicted RBP16.1■□□□□ 0.17
LIME1-201ENST00000309546 CDONQ4KMG0 1287 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms