RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 K7EQM0 130 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 CST7O76096 145 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 PGA3P0DJD8 388 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 FAHP16930 419 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 CCR2P41597 374 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 YBX1P67809 324 aaKnown RBP11.53□□□□□ -0.56
COL3A1-201ENST00000304636 SHHQ15465 462 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 PRICKLE4Q2TBC4 344 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 FBLIM1Q8WUP2 373 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 SPSB1Q96BD6 273 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 TSPAN32Q96QS1 320 aa11.53□□□□□ -0.56
COL3A1-201ENST00000304636 DHHO43323 396 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 NTF3P20783 257 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 PARM1Q6UWI2 310 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 TRILQ7L0X0 811 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 SLC16A13Q7RTY0 426 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 PPP1R3EQ9H7J1 279 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 HOXC8P31273 242 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 ARR3P36575 388 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 EDDM3AQ14507 147 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 SLC25A26Q70HW3 274 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 ANKRD33Q7Z3H0 272 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 LINC01555Q8NAE3 123 aa11.52□□□□□ -0.56
COL3A1-201ENST00000304636 FOXF1Q12946 379 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 IL13RA2Q14627 380 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 GGNBP1Q5YKI7 109 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 PIK3IP1Q96FE7 263 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 CACFD1Q9UGQ2 172 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 CLEC18AA5D8T8 446 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 CCR5P51681 352 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 CLEC12BQ2HXU8 276 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF66Q6ZN08 573 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 ZDHHC23Q8IYP9 409 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 CLEC18CQ8NCF0 446 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 OR4D9Q8NGE8 314 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 EDEM2Q9BV94 578 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF107Q9UII5 783 aaPredicted RBP11.52□□□□□ -0.57
COL3A1-201ENST00000304636 NEU3Q9UQ49 428 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 IGHV3-9P01782 118 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 TMEM91Q6ZNR0 172 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 LSRQ86X29 649 aaPredicted RBP11.52□□□□□ -0.57
COL3A1-201ENST00000304636 OR5B3Q8NH48 314 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF275Q9NSD4 429 aaPredicted RBP11.52□□□□□ -0.57
COL3A1-201ENST00000304636 FBXL17Q9UF56 701 aa11.52□□□□□ -0.57
COL3A1-201ENST00000304636 LAMB2P55268 1798 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SEC14L6B5MCN3 397 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SLC25A6P12236 298 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 GABRA4P48169 554 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SUB1P53999 127 aaKnown RBP eCLIP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 PPP1CBP62140 327 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SP6Q3SY56 376 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 CDC20BQ86Y33 519 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SLC35E1Q96K37 410 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 A0A1B0GTH9 108 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SPRY1O43609 319 aaPredicted RBP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 EPPINO95925 133 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 CXCL10P02778 98 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 FUT3P21217 361 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 HTRA3P83110 453 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 OR4C3Q8NH37 302 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 CHAC2Q8WUX2 184 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 VPS25Q9BRG1 176 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 TMPRSS13Q9BYE2 586 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 MRM2Q9UI43 246 aaKnown RBP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SIRPB1O00241 398 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 TERTO14746 1132 aaKnown RBP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 ENSAO43768 121 aaKnown RBP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 GPANK1O95872 356 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 HNF1AP20823 631 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 HAAOP46952 286 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 OR8G1Q15617 311 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 KISS1Q15726 138 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF141Q15928 474 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 TP53I13Q8NBR0 393 aaPredicted RBP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 KCNE4Q8WWG9 221 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 LANCL2Q9NS86 450 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 LPAR3Q9UBY5 353 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 MMP17Q9ULZ9 603 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 LANCL1O43813 399 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 CRHP06850 196 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 SLC25A4P12235 298 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 RFC3P40938 356 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 CLDN15P56746 228 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 PPIAP62937 165 aaKnown RBP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF117Q03924 483 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 ZIC1Q15915 447 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 OR2A2Q6IF42 318 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 ERGIC1Q969X5 290 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 FAM210BQ96KR6 192 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 NPAS1Q99742 590 aa11.51□□□□□ -0.57
COL3A1-201ENST00000304636 LSM2Q9Y333 95 aaKnown RBP11.51□□□□□ -0.57
COL3A1-201ENST00000304636 ELOA3CA0A087WX78 387 aaPredicted RBP11.5□□□□□ -0.57
COL3A1-201ENST00000304636 AQP7O14520 342 aa11.5□□□□□ -0.57
COL3A1-201ENST00000304636 ABCD3P28288 659 aa11.5□□□□□ -0.57
COL3A1-201ENST00000304636 CDAP32320 146 aa11.5□□□□□ -0.57
COL3A1-201ENST00000304636 GPR12P47775 334 aa11.5□□□□□ -0.57
COL3A1-201ENST00000304636 RPL7L1Q6DKI1 246 aaKnown RBP11.5□□□□□ -0.57
COL3A1-201ENST00000304636 YRDCQ86U90 279 aaKnown RBP11.5□□□□□ -0.57
COL3A1-201ENST00000304636 CBLN2Q8IUK8 224 aa11.5□□□□□ -0.57
COL3A1-201ENST00000304636 OR5AS1Q8N127 324 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms