RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-204	ENST00000594661	CRABP1	P29762	137 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	FOLR3	P41439	243 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	AKR1C3	P42330	323 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	OR2B8P	P59922	312 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	RPS18	P62269	152 aa	Known RBP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	TAF13	Q15543	124 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	SLC16A9	Q7RTY1	509 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	RAB24	Q969Q5	203 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	SPACA9	Q96E40	222 aa	Predicted RBP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	SMIM8	Q96KF7	97 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	STRADB	Q9C0K7	418 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	VDAC3	Q9Y277	283 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	POMT1	Q9Y6A1	747 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	C7orf77	A4D0Y5	90 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661		A8MVM7	634 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	C11orf98	E9PRG8	122 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	RPL36A-HNRNPH2	H7BZ11	118 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	GALR2	O43603	387 aa	Predicted RBP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	FBXO24	O75426	580 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	GLS	O94925	669 aa	Predicted RBP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	OR4E1	P0C645	316 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	GSK3A	P49840	483 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	BPIFB3	P59826	476 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	RPS11	P62280	158 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	RSU1	Q15404	277 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	PCGF3	Q3KNV8	242 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	C1orf140	Q5VVS0	124 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	ADAM5	Q6NVV9	412 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	DHRS11	Q6UWP2	260 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	CLEC9A	Q6UXN8	241 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	UNQ9370/PRO34162	Q6UXP9	181 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	TIPARP	Q7Z3E1	657 aa	Known RBP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	PRR18	Q8N4B5	295 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	UBAC2	Q8NBM4	344 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	INO80E	Q8NBZ0	244 aa	Predicted RBP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	PHYHIP	Q92561	330 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	MIB2	Q96AX9	1013 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	OR14A2	Q96R54	314 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	EXO5	Q9H790	373 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	METTL7A	Q9H8H3	244 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	GDF2	Q9UK05	429 aa	Predicted RBP	13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	KCNIP3	Q9Y2W7	256 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	FREM2	Q5SZK8	3169 aa		13.64	□□□□□ -0.23
PNKP-204	ENST00000594661	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	PRR32	B1ATL7	298 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	REN	P00797	406 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	CALCB	P10092	127 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	ADH6	P28332	368 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	RPS15	P62841	145 aa	Known RBP	13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	CLINT1	Q14677	625 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	OR8G1	Q15617	311 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	PPP1R1C	Q8WVI7	109 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	TMEM234	Q8WY98	164 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	ST8SIA1	Q92185	356 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	POFUT1	Q9H488	388 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	C19orf12	Q9NSK7	152 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	WIF1	Q9Y5W5	379 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661		A0A1W2PNU3	283 aa	Predicted RBP	13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	TVP23A	A6NH52	213 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	SHISA8	B8ZZ34	492 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	CD1A	P06126	327 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	FCGR3A	P08637	254 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	AKAIN1	P0CW23	69 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	HLA-G	P17693	338 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	ATP1B3	P54709	279 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	SUMO3	P55854	103 aa	Predicted RBP	13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	FOXF1	Q12946	379 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	AIMP2	Q13155	320 aa	Known RBP	13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	KIAA0141	Q14154	515 aa	Predicted RBP	13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	SSPN	Q14714	243 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	EXT1	Q16394	746 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	AWAT1	Q58HT5	328 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	ISOC2	Q96AB3	205 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	ADAD1	Q96M93	576 aa	Known RBP	13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	OR5B2	Q96R09	309 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	SYT4	Q9H2B2	425 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	ZNF160	Q9HCG1	818 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	OR5V1	Q9UGF6	321 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	PADI1	Q9ULC6	663 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	KLHDC2	Q9Y2U9	406 aa		13.63	□□□□□ -0.23
PNKP-204	ENST00000594661	SEC14L6	B5MCN3	397 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661		C9JQL5	133 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	RPP14	O95059	124 aa	Known RBP	13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	PLG	P00747	810 aa	Predicted RBP	13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	MT-ATP6	P00846	226 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	CRYAB	P02511	175 aa	Known RBP	13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	HKR1	P10072	659 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	TNFRSF9	Q07011	255 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	ATXN7L3	Q14CW9	347 aa	Predicted RBP	13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	CDCP2	Q5VXM1	449 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	C6orf15	Q6UXA7	325 aa	Predicted RBP	13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	FAM220A	Q7Z4H9	259 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	BEND2	Q8NDZ0	799 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	CT55	Q8WUE5	264 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	TMED6	Q8WW62	240 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	CYTL1	Q9NRR1	136 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	VSX1	Q9NZR4	365 aa	Predicted RBP	13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	UPB1	Q9UBR1	384 aa		13.62	□□□□□ -0.23
PNKP-204	ENST00000594661	ETV7	Q9Y603	341 aa		13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms