RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 NKPD1Q17RQ9 610 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 DEFB113Q30KQ7 82 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 SNAI3Q3KNW1 292 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 Q499Y3 187 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 ACSM3Q53FZ2 586 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 FOXB2Q5VYV0 432 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 USP43Q70EL4 1123 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 LRP11Q86VZ4 500 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 C12orf43Q96C57 262 aaKnown RBP13.28□□□□□ -0.28
SS18-216ENST00000580751 PGAM5Q96HS1 289 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 KCTD7Q96MP8 289 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 PDCD1LG2Q9BQ51 273 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 CHCHD6Q9BRQ6 235 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 POFUT1Q9H488 388 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 TXNL4BQ9NX01 149 aaKnown RBP13.28□□□□□ -0.28
SS18-216ENST00000580751 N6AMT1Q9Y5N5 214 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 ARID1AO14497 2285 aa13.28□□□□□ -0.28
SS18-216ENST00000580751 PNMA8CA0A1B0GUJ8 204 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 PLSCR5A0PG75 271 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 ZNF879B4DU55 563 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 GABRPO00591 440 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 TBX1O43435 398 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 TMEM127O75204 238 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 CD2P06729 351 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 PAX1P15863 534 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 SELEP16581 610 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 CDKN1AP38936 164 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 GK2Q14410 553 aaPredicted RBP13.27□□□□□ -0.29
SS18-216ENST00000580751 ZMAT1Q5H9K5 638 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 TMEM91Q6ZNR0 172 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 FAM57BQ71RH2 274 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 PGAP1Q75T13 922 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 DOK3Q7L591 496 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 MRPL21Q7Z2W9 205 aaKnown RBP13.27□□□□□ -0.29
SS18-216ENST00000580751 PLPP7Q8NBV4 271 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 TMEM203Q969S6 136 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 HAVCR1Q96D42 359 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 CMBLQ96DG6 245 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 TRMT61AQ96FX7 289 aaKnown RBP13.27□□□□□ -0.29
SS18-216ENST00000580751 GSX2Q9BZM3 304 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 MS4A5Q9H3V2 200 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 BRD7Q9NPI1 651 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 CYSLTR2Q9NS75 346 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 ZNF701Q9NV72 531 aaPredicted RBP13.27□□□□□ -0.29
SS18-216ENST00000580751 TAAR3PQ9P1P4 343 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 MYEF2Q9P2K5 600 aaKnown RBP13.27□□□□□ -0.29
SS18-216ENST00000580751 GTF2A1LQ9UNN4 478 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 SLC22A13Q9Y226 551 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 ARFGEF3Q5TH69 2177 aa13.27□□□□□ -0.29
SS18-216ENST00000580751 TRAV1-2A0A0B4J238 106 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 LOC100506127A0A0U1RQW1 187 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 A0A1B0GVI7 797 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 TIMM8AO60220 97 aaPredicted RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 MTRF1O75570 445 aaKnown RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 IL1AP01583 271 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 ERCC1P07992 297 aaPredicted RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 UCHL1P09936 223 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 KITLGP21583 273 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 MTNR1BP49286 362 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 MAP1AP78559 2803 aaPredicted RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 PSG7Q13046 419 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 HLXQ14774 488 aaPredicted RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 GLYATL3Q5SZD4 288 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 CEACAM19Q7Z692 300 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 TPRA1Q86W33 373 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 LRRC75A-AS1Q8N1F1 130 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 OR8B12Q8NGG6 310 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 SPSB4Q96A44 273 aa13.26□□□□□ -0.29
SS18-216ENST00000580751 NAA50Q9GZZ1 169 aaKnown RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 EXOSC4Q9NPD3 245 aaKnown RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 PURGQ9UJV8 347 aaKnown RBP13.26□□□□□ -0.29
SS18-216ENST00000580751 TRBV5-7A0A0A0MS05 114 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 LOC107986453A0A1B0GWG9 222 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 SYT7O43581 403 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 OCM2P0CE71 109 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 ALDH3B1P43353 468 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 PTH2RP49190 550 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 OR2AE1Q8NHA4 323 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 RGP1Q92546 391 aaPredicted RBP13.25□□□□□ -0.29
SS18-216ENST00000580751 RPL3LQ92901 407 aaKnown RBP13.25□□□□□ -0.29
SS18-216ENST00000580751 CENPOQ9BU64 300 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 RAB1BQ9H0U4 201 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 BARX1Q9HBU1 254 aaPredicted RBP13.25□□□□□ -0.29
SS18-216ENST00000580751 DHDHQ9UQ10 334 aa13.25□□□□□ -0.29
SS18-216ENST00000580751 A0A1B0GTI1 187 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 ANOS1P23352 680 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 MYL9P24844 172 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 RANBP1P43487 201 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 MMP15P51511 669 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 PSMD7P51665 324 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 ATP5J2P56134 94 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 ZNF92Q03936 586 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 GFOD2Q3B7J2 385 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 HSD17B12Q53GQ0 312 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 ZBTB37Q5TC79 503 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 C22orf42Q6IC83 251 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 OR2T2Q6IF00 324 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 CROCCP3Q8IVE0 287 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 PARP16Q8N5Y8 322 aa13.24□□□□□ -0.29
SS18-216ENST00000580751 SGK3Q96BR1 496 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms