RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ANXA2P2A6NMY6 339 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 LOC110117498-PIK3R3F6TDL0 507 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 FOXH1O75593 365 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 FSTL3O95633 263 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 CST4P01036 141 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 IFNA2P01563 188 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 IGLV3-1P01715 115 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 OR2T7P0C7T2 308 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 RPS2P15880 293 aaKnown RBP11.49□□□□□ -0.57
SHMT2-219ENST00000555563 ATP6V1E1P36543 226 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 SNRPGP62308 76 aaKnown RBP11.49□□□□□ -0.57
SHMT2-219ENST00000555563 CSNK2BP67870 215 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF154Q13106 437 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 PRDX4Q13162 271 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 TMED1Q13445 227 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 SNCBQ16143 134 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 FAHD2BQ6P2I3 314 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF826PQ6ZT77 177 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 BOLLQ8N9W6 283 aaKnown RBP11.49□□□□□ -0.57
SHMT2-219ENST00000555563 OR4M2Q8NGB6 313 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 OR2T27Q8NH04 317 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 OR51E1Q8TCB6 317 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 TRUB1Q8WWH5 349 aaKnown RBP11.49□□□□□ -0.57
SHMT2-219ENST00000555563 PPP1R14AQ96A00 147 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 ITPKCQ96DU7 683 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 FAHD2AQ96GK7 314 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 FAM71F1Q96KD3 344 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-219ENST00000555563 MOB1AQ9H8S9 216 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 GPR84Q9NQS5 396 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 RNF7Q9UBF6 113 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 AASSQ9UDR5 926 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.49□□□□□ -0.57
SHMT2-219ENST00000555563 GTF2A1LQ9UNN4 478 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 GMPPBQ9Y5P6 360 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 FBN1P35555 2871 aaKnown RBP11.48□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF850A8MQ14 1090 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 A8MXK9 166 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 ANKRD65E5RJM6 399 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 PHF1O43189 567 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-219ENST00000555563 TTRP02766 147 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 KRT8P05787 483 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 CD80P33681 288 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 SRP14P37108 136 aaKnown RBP11.48□□□□□ -0.57
SHMT2-219ENST00000555563 MTNR1AP48039 350 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 IL5RAQ01344 420 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 RCN1Q15293 331 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 OCLNQ16625 522 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 ESCO2Q56NI9 601 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 SLC25A30Q5SVS4 291 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF684Q5T5D7 378 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 BCL2L15Q5TBC7 163 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 DCAF12L2Q5VW00 463 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 YIPF7Q8N8F6 280 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 DEFB108BQ8NET1 73 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 OR1M1Q8NGA1 313 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 HPSE2Q8WWQ2 592 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 PIGCQ92535 297 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 RNFT2Q96EX2 444 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 TMPRSS13Q9BYE2 586 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 FGF23Q9GZV9 251 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-219ENST00000555563 METTL17Q9H7H0 456 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-219ENST00000555563 MPC1Q9Y5U8 109 aa11.48□□□□□ -0.57
SHMT2-219ENST00000555563 ANK3Q12955 4377 aaKnown RBP11.48□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF816-ZNF321PA0A0X1KG74 233 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 C3orf80F5H4A9 247 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 LGALS8O00214 317 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 RPP14O95059 124 aaKnown RBP11.47□□□□□ -0.57
SHMT2-219ENST00000555563 AVPP01185 164 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 WNT2P09544 360 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 EGR1P18146 543 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 GABRB1P18505 474 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 THBS2P35442 1172 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 MAP2K3P46734 347 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF85Q03923 595 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 MEDAGQ5VYS4 303 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 SFRP4Q6FHJ7 346 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-219ENST00000555563 LYPD2Q6UXB3 125 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 DCDC5Q6ZRR9 648 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 C1orf229Q6ZS94 237 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-219ENST00000555563 C11orf53Q8IXP5 236 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 ZDHHC23Q8IYP9 409 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 ENTHD1Q8IYW4 607 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 ELMOD2Q8IZ81 293 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 GALNT4Q8N4A0 578 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 GCSAMQ8N6F7 178 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 OR5P3Q8WZ94 311 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 NEIL1Q96FI4 390 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-219ENST00000555563 MICU1Q9BPX6 476 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 RTL8AQ9BWD3 113 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 SSBP3Q9BWW4 388 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-219ENST00000555563 TLNRD1Q9H1K6 362 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 ABCB9Q9NP78 766 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 MMP26Q9NRE1 261 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 FAM118AQ9NWS6 357 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 SMPD3Q9NY59 655 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-219ENST00000555563 MIOXQ9UGB7 285 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 OR52A1Q9UKL2 312 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 LRCH1Q9Y2L9 728 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 SNX5Q9Y5X3 404 aa11.47□□□□□ -0.57
SHMT2-219ENST00000555563 LOC105371242A0A075B767 164 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms