RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 YIF1BQ5BJH7 314 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 LIPKQ5VXJ0 399 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 KCTD8Q6ZWB6 473 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 KRT74Q7RTS7 529 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 OR2Z1Q8NG97 314 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 OR13C3Q8NGS6 347 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 GPR148Q8TDV2 347 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 DIRC2Q96SL1 478 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 PAPOLGQ9BWT3 736 aaKnown RBP10.42□□□□□ -0.74
SHMT2-209ENST00000553949 SLC22A4Q9H015 551 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 RAB1BQ9H0U4 201 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 TPK1Q9H3S4 243 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 PLEKHA1Q9HB21 404 aa10.42□□□□□ -0.74
SHMT2-209ENST00000553949 ZNF275Q9NSD4 429 aaPredicted RBP10.42□□□□□ -0.74
SHMT2-209ENST00000553949 ZNF701Q9NV72 531 aaPredicted RBP10.42□□□□□ -0.74
SHMT2-209ENST00000553949 TACC2O95359 2948 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 TRIM64CA6NLI5 447 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ZNF850A8MQ14 1090 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 H0YL77 283 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 MLNRO43193 412 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 INMTO95050 263 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ERCC1P07992 297 aaPredicted RBP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ADH4P08319 380 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 SMIM18P0DKX4 95 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 PAX1P15863 534 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 PSMB9P28065 219 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 GNALP38405 381 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 MAGEB1P43366 347 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 RPS11P62280 158 aaKnown RBP eCLIP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 PRDX4Q13162 271 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 OR8G1Q15617 311 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 TSTQ16762 297 aaKnown RBP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ARMCX4Q5H9R4 360 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 CDH24Q86UP0 819 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 OR10AD1Q8NGE0 317 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 OR13C5Q8NGS8 318 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 TSEN15Q8WW01 171 aaKnown RBP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 PIGCQ92535 297 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 NINJ1Q92982 152 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 FGGYQ96C11 551 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 C10orf35Q96D05 121 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ADAT3Q96EY9 351 aaPredicted RBP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ELMOD3Q96FG2 381 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 SORCS2Q96PQ0 1159 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ADAT1Q9BUB4 502 aaKnown RBP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 PPP1R3EQ9H7J1 279 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 VCX3AQ9NNX9 186 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 BEX4Q9NWD9 120 aaPredicted RBP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 NKIRAS2Q9NYR9 191 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 DHDHQ9UQ10 334 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 NOP16Q9Y3C1 178 aaKnown RBP10.41□□□□□ -0.74
SHMT2-209ENST00000553949 MPC1Q9Y5U8 109 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 ABCA12Q86UK0 2595 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 APCP25054 2843 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 CSMD2Q7Z408 3487 aa10.41□□□□□ -0.74
SHMT2-209ENST00000553949 TRBV5-5A0A0J9YX44 114 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 MAGEA13PA6NCF6 341 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 GMDSO60547 372 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 CD55P08174 381 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 OCM2P0CE71 109 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 ZNF20P17024 532 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 TNFSF4P23510 183 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 SOX2P48431 317 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 FAM209AQ5JX71 171 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 CLVS2Q5SYC1 327 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 TMEM42Q69YG0 159 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 PHC2Q8IXK0 858 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 ZDHHC23Q8IYP9 409 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 MS4A15Q8N5U1 240 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 UBASH3BQ8TF42 649 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 NEU4Q8WWR8 484 aaPredicted RBP10.4□□□□□ -0.74
SHMT2-209ENST00000553949 DVL3Q92997 716 aaPredicted RBP10.4□□□□□ -0.74
SHMT2-209ENST00000553949 MUL1Q969V5 352 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 MBD6Q96DN6 1003 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 TRMT61AQ96FX7 289 aaKnown RBP10.4□□□□□ -0.74
SHMT2-209ENST00000553949 TMED9Q9BVK6 235 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 CHST5Q9GZS9 411 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 ABCB9Q9NP78 766 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 DECR2Q9NUI1 292 aa10.4□□□□□ -0.74
SHMT2-209ENST00000553949 FLNBO75369 2602 aaKnown RBP10.39□□□□□ -0.75
SHMT2-209ENST00000553949 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-209ENST00000553949 ANKRD61A6NGH8 418 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 ANXA2P2A6NMY6 339 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 F5H5P2 479 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 NDUFS7O75251 213 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 NCR1O76036 304 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 SERPINA3P01011 423 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 NRASP01111 189 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 IGHV4-39P01824 125 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 PTH2RP49190 550 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 GP2P55259 537 aaKnown RBP10.39□□□□□ -0.75
SHMT2-209ENST00000553949 RPS25P62851 125 aaKnown RBP10.39□□□□□ -0.75
SHMT2-209ENST00000553949 CCL8P80075 99 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 TNFAIP6P98066 277 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-209ENST00000553949 SSX1Q16384 188 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 DEFB113Q30KQ7 82 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 Q499Y3 187 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 CEP78Q5JTW2 689 aa10.39□□□□□ -0.75
SHMT2-209ENST00000553949 SYT6Q5T7P8 510 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-209ENST00000553949 PLCXD3Q63HM9 321 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms