RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 COMMD7Q86VX2 200 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 OR5AS1Q8N127 324 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 DTWD2Q8NBA8 298 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 OR2AK2Q8NG84 335 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 PHYHIPQ92561 330 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ZBTB8AQ96BR9 441 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CHRNA10Q9GZZ6 450 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ZCCHC4Q9H5U6 513 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 PROK2Q9HC23 129 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 COMMD9Q9P000 198 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 COPZ2Q9P299 210 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CSAG2Q9Y5P2 127 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ETV7Q9Y603 341 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TRAV39A0A0B4J263 110 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MEGF11A6BM72 1044 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SGCEO43556 437 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 RAD51DO75771 328 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 WISP2O76076 250 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SERPINA5P05154 406 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 GLRA1P23415 457 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PER3P56645 1201 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 TAS2R19P59542 299 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PPP1R1AQ13522 171 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 KISS1Q15726 138 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 UBE2V2Q15819 145 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 CSRP2Q16527 193 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ATPAF1Q5TC12 328 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SLC25A47Q6Q0C1 308 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MCEMP1Q8IX19 187 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SLC25A28Q96A46 364 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 NAA11Q9BSU3 229 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 FAAP24Q9BTP7 215 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 GON7Q9BXV9 100 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MRPL13Q9BYD1 178 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SMIM3Q9BZL3 60 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 STRADBQ9C0K7 418 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 METTL8Q9H825 291 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PLEKHJ1Q9NW61 149 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 EHFQ9NZC4 300 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 VSIG4Q9Y279 399 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 DOCK11Q5JSL3 2073 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 IGKV1-9A0A0C4DH69 117 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MED19A0JLT2 244 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ZSCAN5BA6NJL1 495 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 AQP7P3A6NL99 342 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 DISC1C4P0D8 188 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 TOX3O15405 576 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 GSTZ1O43708 216 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 CBR3O75828 277 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 AQP8O94778 261 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 LPLP06858 475 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 IFI6P09912 130 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PPP3CBP16298 524 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SELEP16581 610 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 NFYAP23511 347 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 EIF1P41567 113 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MLF1P58340 268 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 HOXA4Q00056 320 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MC2RQ01718 297 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 DHRS2Q13268 280 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 HLXQ14774 488 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PCK2Q16822 640 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 TSPO2Q5TGU0 170 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 THOC7Q6I9Y2 204 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 WDR5BQ86VZ2 330 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 TUSC5Q8IXB3 177 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PRR18Q8N4B5 295 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PNLDC1Q8NA58 520 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 CLEC1AQ8NC01 280 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 DEFB124Q8NES8 71 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 GJC3Q8NFK1 279 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 OR5T2Q8NGG2 359 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 GPX8Q8TED1 209 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 CXorf58Q96LI9 332 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PIGQQ9BRB3 760 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PIPOXQ9P0Z9 390 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SEMA5BQ9P283 1151 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 INTS1Q8N201 2190 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 A0A0A6YYD4 124 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 OR2AT4A6NND4 320 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 C9orf172C9J069 976 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 M0R296 226 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 SULT1B1O43704 296 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MRPL33O75394 65 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 RPA2P15927 270 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MGMTP16455 207 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ACKR3P25106 362 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MMP16P51512 607 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ATP1B3P54709 279 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 DLX5P56178 289 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 DSCR4P56555 118 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 TMEM50BP56557 158 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ACTBP60709 375 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ACTG1P63261 375 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 RSU1Q15404 277 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 EXT1Q16394 746 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PHLDA2Q53GA4 152 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 PLAC9Q5JTB6 97 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 HES3Q5TGS1 186 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms