RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 OR4D10Q8NGI6 311 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 OR2V1Q8NHB1 315 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 TNFAIP8L1Q8WVP5 186 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 CPNE4Q96A23 557 aaPredicted RBP8.68□□□□□ -1.02
SS18-205ENST00000542420 SPSB1Q96BD6 273 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 GNRHR2Q96P88 292 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 C1QTNF6Q9BXI9 259 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 TMEM59Q9BXS4 323 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 MS4A7Q9GZW8 240 aaPredicted RBP8.68□□□□□ -1.02
SS18-205ENST00000542420 KCNK15Q9H427 330 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 RNF122Q9H9V4 155 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 ABI3Q9P2A4 366 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 SHPKQ9UHJ6 478 aa8.68□□□□□ -1.02
SS18-205ENST00000542420 ZNF716A6NP11 495 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 MCRIP1C9JLW8 97 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 H3BSH0 61 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 L7N2F9 121 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 NCKAP5O14513 1909 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 HIST1H1DP16402 221 aaKnown RBP8.67□□□□□ -1.02
SS18-205ENST00000542420 ECI1P42126 302 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 CYB561P49447 251 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 HOXA1P49639 335 aaPredicted RBP8.67□□□□□ -1.02
SS18-205ENST00000542420 PRKXP51817 358 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 SEC61A1P61619 476 aaKnown RBP8.67□□□□□ -1.02
SS18-205ENST00000542420 OPCMLQ14982 345 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 MOGAT2Q3SYC2 334 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 ACER2Q5QJU3 275 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 PLA2G2CQ5R387 149 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 ATPAF1Q5TC12 328 aaPredicted RBP8.67□□□□□ -1.02
SS18-205ENST00000542420 GLIPR1L1Q6UWM5 242 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 FAM57BQ71RH2 274 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 RAB11FIP2Q7L804 512 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 GALNT16Q8N428 558 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 OR13C8Q8NGS7 320 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 RHBDD1Q8TEB9 315 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 ZNF385AQ96PM9 386 aaKnown RBP8.67□□□□□ -1.02
SS18-205ENST00000542420 LINC00470Q9BZP3 86 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 POFUT1Q9H488 388 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 BEX1Q9HBH7 125 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 CA10Q9NS85 328 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 COA4Q9NYJ1 87 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 TECTAO75443 2155 aa8.67□□□□□ -1.02
SS18-205ENST00000542420 IGKV3D-15A0A087WSY6 115 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 CCDC187A0A096LP49 1063 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 TMEM235A6NFC5 223 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 WIPF3A6NGB9 483 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 LRRC3CA6NJW4 275 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 RFPL4AA6NLU0 287 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 FOXI3A8MTJ6 420 aaPredicted RBP8.66□□□□□ -1.02
SS18-205ENST00000542420 SERPINE3A8MV23 424 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 PRSS44E7EML9 344 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 RFPL4AL1F8VTS6 287 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 M0R135 149 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 AGRPO00253 132 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 CYTIPO60759 359 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 SLC25A4P12235 298 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 TCN2P20062 427 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 CARD18P57730 90 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 RAB14P61106 215 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 RPS27AP62979 156 aaKnown RBP8.66□□□□□ -1.02
SS18-205ENST00000542420 C4orf46Q504U0 113 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 LYG2Q86SG7 212 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 ACBD4Q8NC06 268 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 OR5M8Q8NGP6 311 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 HAS2Q92819 552 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 ZNF799Q96GE5 643 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 C12orf57Q99622 126 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 SDK1Q7Z5N4 2213 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 MFNGO00587 321 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 TERTO14746 1132 aaKnown RBP8.66□□□□□ -1.02
SS18-205ENST00000542420 TNFSF11O14788 317 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 CFDP00746 253 aaPredicted RBP8.66□□□□□ -1.02
SS18-205ENST00000542420 FCER2P06734 321 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 HCKP08631 526 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 SP9P0CG40 484 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 PPP3CBP16298 524 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 ZBTB25P24278 435 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 ZNF345Q14585 488 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 SURF2Q15527 256 aaPredicted RBP8.66□□□□□ -1.02
SS18-205ENST00000542420 PHYHD1Q5SRE7 291 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 TMEM164Q5U3C3 297 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 CHMP1BQ7LBR1 199 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 OVCH2Q7RTZ1 564 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 COMMD2Q86X83 199 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 ZNF101Q8IZC7 436 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 TMEM105Q8N8V8 129 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 RAB3CQ96E17 227 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 NECAB3Q96P71 396 aaPredicted RBP8.66□□□□□ -1.02
SS18-205ENST00000542420 CDC6Q99741 560 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 SLC6A7Q99884 636 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 FAM173AQ9BQD7 235 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 SRXN1Q9BYN0 137 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 TINAGL1Q9GZM7 467 aaPredicted RBP8.66□□□□□ -1.02
SS18-205ENST00000542420 TMEM38BQ9NVV0 291 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 P4HTMQ9NXG6 502 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 ZNF319Q9P2F9 582 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 B4GALT7Q9UBV7 327 aa8.66□□□□□ -1.02
SS18-205ENST00000542420 OR6C6A6NF89 314 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 MFSD2BA6NFX1 497 aa8.65□□□□□ -1.02
SS18-205ENST00000542420 M0R296 226 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms