RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SHANK3Q9BYB0 1731 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 PARP4Q9UKK3 1724 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 SSH2Q76I76 1423 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 YTHDC2Q9H6S0 1430 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 ROCK1Q13464 1354 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 WNK3Q9BYP7 1800 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 IGKV2-28A0A075B6P5 120 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 IGKV6-21A0A0C4DH24 114 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 LOC100653049A0A140TA62 436 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 SYCE1LA8MT33 242 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 PDZK1P1A8MUH7 402 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 ZNF879B4DU55 563 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 SLC19A2O60779 497 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 ZNF324O75467 553 aaPredicted RBP2.75□□□□□ -1.97
CD44-223ENST00000526553 KRT34O76011 436 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 IGKV2D-28P01615 120 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 MYL9P24844 172 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 HOXA9P31269 272 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 PFN2P35080 140 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 HCAR3P49019 387 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 P2RX1P51575 399 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 CRISP3P54108 245 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 UBE2NP61088 152 aaKnown RBP2.75□□□□□ -1.97
CD44-223ENST00000526553 KDSRQ06136 332 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 ERCC8Q13216 396 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 GABRA6Q16445 453 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 ZNF829Q3KNS6 432 aaPredicted RBP2.75□□□□□ -1.97
CD44-223ENST00000526553 PCP2Q8IVA1 136 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 KIF2BQ8N4N8 673 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 DUSP18Q8NEJ0 188 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 HDHD3Q9BSH5 251 aaPredicted RBP2.75□□□□□ -1.97
CD44-223ENST00000526553 IFI27L2Q9H2X8 130 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 VCXQ9H320 206 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 ARMC7Q9H6L4 198 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 UBE2ZQ9H832 354 aaPredicted RBP2.75□□□□□ -1.97
CD44-223ENST00000526553 MED4Q9NPJ6 270 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 ADA2Q9NZK5 511 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 KPTNQ9Y664 436 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 OVOS2A0A0G2JMS6 1433 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 OVOS2A0A0J9YW53 1432 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 OVOS2Q6IE36 1432 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 BTAF1O14981 1849 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 TUBGCP6Q96RT7 1819 aa2.75□□□□□ -1.97
CD44-223ENST00000526553 ABCC11Q96J66 1382 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 GOLGB1Q14789 3259 aaKnown RBP2.74□□□□□ -1.97
CD44-223ENST00000526553 IGHV3OR16-9A0A0B4J2B5 98 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 ANKRD65E5RJM6 399 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 E7EWF7 191 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 INS-IGF2F8WCM5 200 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 PSMD11O00231 422 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 RDH16O75452 317 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 GABARAPO95166 117 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 SLC25A14O95258 325 aaPredicted RBP2.74□□□□□ -1.97
CD44-223ENST00000526553 APOA1P02647 267 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 GLAP06280 429 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 EIF4EP06730 217 aaKnown RBP2.74□□□□□ -1.97
CD44-223ENST00000526553 IVDP26440 423 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 CSNK1A1P48729 337 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 ZNF136P52737 540 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 ATP6V0D1P61421 351 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 SLC39A6Q13433 755 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 IRF4Q15306 451 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 TSC22D1Q15714 1073 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 STK11Q15831 433 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 TSPO2Q5TGU0 170 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 LIN9Q5TKA1 542 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 METTL21CQ5VZV1 264 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 C12orf54Q6X4T0 127 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 FBXW12Q6X9E4 464 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 METTL13Q8N6R0 699 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 ZFP41Q8N8Y5 198 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 OR6K6Q8NGW6 343 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 TCP10LQ8TDR4 215 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 ABHD3Q8WU67 409 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 CTSFQ9UBX1 484 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 OR12D3Q9UGF7 316 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 LRRC37A3O60309 1634 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 ANKARQ7Z5J8 1434 aa2.74□□□□□ -1.97
CD44-223ENST00000526553 EIF3AQ14152 1382 aaKnown RBP2.74□□□□□ -1.97
CD44-223ENST00000526553 PEAK1Q9H792 1746 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 MAP3K15Q6ZN16 1313 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 ATP7BP35670 1465 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 IGLV4-69A0A075B6H9 119 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 IGLV1-50A0A075B6I6 118 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 LOC100506127A0A0U1RQW1 187 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 SPRR5A0A1B0GTR4 108 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 HACD1B0YJ81 288 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 SEMA3DO95025 777 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 LCA5LO95447 670 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 CATP04040 527 aaKnown RBP2.73□□□□□ -1.97
CD44-223ENST00000526553 CTSLP07711 333 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 CD3GP09693 182 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 OR8U9P0C7N5 309 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 HTR1DP28221 377 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 SERPINB8P50452 374 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 HADHBP55084 474 aaKnown RBP2.73□□□□□ -1.97
CD44-223ENST00000526553 SYNJ2BPP57105 145 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 RCAN2Q14206 197 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 PON2Q15165 354 aa2.73□□□□□ -1.97
CD44-223ENST00000526553 RSPO1Q2MKA7 263 aaPredicted RBP2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms