RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 OR52A1Q9UKL2 312 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 KCNS2Q9ULS6 477 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 SNX5Q9Y5X3 404 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 A6NLC8 198 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 ZNF850A8MQ14 1090 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 IFNL4K9M1U5 179 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 P2RY10O00398 339 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 LMX1BO60663 402 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 FAM20BO75063 409 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 IGHV2-5P01817 119 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 TTRP02766 147 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 IRF2P14316 349 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 PSMB10P40306 273 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 MAP2K3P46734 347 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 SLC34A1Q06495 639 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 MZT1Q08AG7 82 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 PRDX4Q13162 271 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 SNCBQ16143 134 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 FAM201AQ5SY85 155 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 ZNF684Q5T5D7 378 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 ZNF691Q5VV52 312 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 TTC23Q5W5X9 447 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 KLBQ86Z14 1044 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 BOLLQ8N9W6 283 aaKnown RBP12.42□□□□□ -0.42
USP4-212ENST00000486549 SPERTQ8NA61 448 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 CNIH3Q8TBE1 160 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 PIGCQ92535 297 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 RAB39BQ96DA2 213 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 ADI1Q9BV57 179 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 VCXQ9H320 206 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 FN3KRPQ9HA64 309 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 ACOXLQ9NUZ1 547 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 C14orf119Q9NWQ9 140 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 PCDHB10Q9UN67 800 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 SLC22A13Q9Y226 551 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 EXOGQ9Y2C4 368 aaKnown RBP12.42□□□□□ -0.42
USP4-212ENST00000486549 JMJD1CQ15652 2540 aa12.42□□□□□ -0.42
USP4-212ENST00000486549 ANK3Q12955 4377 aaKnown RBP12.41□□□□□ -0.42
USP4-212ENST00000486549 hCG_1807616A0A1W2PRN6 198 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 ANXA2P2A6NMY6 339 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 H0YHG0 523 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 H3BSH0 61 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 J3QRE1 110 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 SULT1C4O75897 302 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 HOXA4Q00056 320 aaPredicted RBP12.41□□□□□ -0.42
USP4-212ENST00000486549 SMN1Q16637 294 aaKnown RBP12.41□□□□□ -0.42
USP4-212ENST00000486549 ZNF826PQ6ZT77 177 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 THAP5Q7Z6K1 395 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 CATSPERDQ86XM0 798 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 PRIMA1Q86XR5 153 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 ELMOD2Q8IZ81 293 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 C1orf87Q8N0U7 546 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 SETD9Q8NE22 299 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 C19orf18Q8NEA5 215 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 SEMA6DQ8NFY4 1073 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 RORBQ92753 470 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 ERGIC1Q969X5 290 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 C1orf123Q9NWV4 160 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 PIGLQ9Y2B2 252 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 MYRFQ9Y2G1 1151 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 RPL36Q9Y3U8 105 aaKnown RBP12.41□□□□□ -0.42
USP4-212ENST00000486549 PCDHGB1Q9Y5G3 927 aa12.41□□□□□ -0.42
USP4-212ENST00000486549 ZNF816-ZNF321PA0A0X1KG74 233 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 B4DSR2 109 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 WBP4O75554 376 aaKnown RBP12.4□□□□□ -0.42
USP4-212ENST00000486549 FADS2O95864 444 aaKnown RBP12.4□□□□□ -0.42
USP4-212ENST00000486549 CST4P01036 141 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 IGLV3-1P01715 115 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 FAHP16930 419 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 CAPGP40121 348 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 MDH2P40926 338 aaKnown RBP12.4□□□□□ -0.42
USP4-212ENST00000486549 OR12D2P58182 307 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 ADARB1P78563 741 aaKnown RBP12.4□□□□□ -0.42
USP4-212ENST00000486549 ZNF181Q2M3W8 571 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 CDONQ4KMG0 1287 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 KCTD8Q6ZWB6 473 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 WDR86Q86TI4 376 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 LHFPL3Q86UP9 236 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 ZDHHC23Q8IYP9 409 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 KLHL36Q8N4N3 616 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 SPICQ8N5J4 248 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 ACBD7Q8N6N7 88 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 Q8TCH9 128 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 ITPKCQ96DU7 683 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 C1orf159Q96HA4 380 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 MICU1Q9BPX6 476 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 ALG8Q9BVK2 526 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 RTL8AQ9BWD3 113 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 BEX2Q9BXY8 128 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 RNPEPL1Q9HAU8 725 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 RNF7Q9UBF6 113 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 MPC1Q9Y5U8 109 aa12.4□□□□□ -0.42
USP4-212ENST00000486549 PPIAL4EA0A075B759 164 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 PPIAL4DF5H284 164 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 J3QLW9 94 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 MTRF1O75570 445 aaKnown RBP12.39□□□□□ -0.43
USP4-212ENST00000486549 DHRS3O75911 302 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 PTBP3O95758 552 aaKnown RBP12.39□□□□□ -0.43
USP4-212ENST00000486549 MSMBP08118 114 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 PPIAL4FP0DN26 164 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms