RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ZNF283Q8N7M2 679 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 OR2M3Q8NG83 312 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 SCARB1Q8WTV0 552 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 SPACA9Q96E40 222 aaPredicted RBP9.42□□□□□ -0.9
CUX1-205ENST00000425244 TMEM41AQ96HV5 264 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 PRRT1Q99946 306 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 BANF2Q9H503 90 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 KLHL13Q9P2N7 655 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 TRAV14DV4A0A0A6YYC5 116 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 OR5H14A6NHG9 310 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 RFPL4AA6NLU0 287 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 RFPL4AL1F8VTS6 287 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 SULT2B1O00204 365 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 IFNA6P05013 189 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 HCKP08631 526 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CD37P11049 281 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CD96P40200 585 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 PPP1R1AQ13522 171 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 SGCAQ16586 387 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 GLIPR1L1Q6UWM5 242 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 RHOUQ7L0Q8 258 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 KCTD9Q7L273 389 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 PPP1R32Q7Z5V6 425 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 RELL2Q8NC24 303 aaPredicted RBP9.41□□□□□ -0.9
CUX1-205ENST00000425244 OR8B12Q8NGG6 310 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 NPRL2Q8WTW4 380 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 ST8SIA2Q92186 375 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 ST8SIA4Q92187 359 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 PTX4Q96A99 478 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 SGK3Q96BR1 496 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CYYR1Q96J86 154 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 JSRP1Q96MG2 331 aaPredicted RBP9.41□□□□□ -0.9
CUX1-205ENST00000425244 LINC00052Q96N35 136 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 GPER1Q99527 375 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CST11Q9H112 138 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 PPA2Q9H2U2 334 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 P4HTMQ9NXG6 502 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 LOC102723996A0A087X1L8 192 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 A0A1B0GTI1 187 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 SNAPC5O75971 98 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 RLN2P04090 185 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 OR3A4PP47883 348 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CX3CR1P49238 355 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 ATP1A1-AS1Q5TC04 95 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 ZNF660Q6AZW8 331 aaPredicted RBP9.41□□□□□ -0.9
CUX1-205ENST00000425244 WDSUB1Q8N9V3 476 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 TMEM104Q8NE00 496 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 OR5D18Q8NGL1 313 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 ELP5Q8TE02 316 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 IMMP1LQ96LU5 166 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 MICU1Q9BPX6 476 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 SPRY4Q9C004 299 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 ZNF700Q9H0M5 742 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 COMMD9Q9P000 198 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 ZNF319Q9P2F9 582 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 PFDN2Q9UHV9 154 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 MRPS28Q9Y2Q9 187 aaKnown RBP9.41□□□□□ -0.9
CUX1-205ENST00000425244 ARID1AO14497 2285 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 EXPH5Q8NEV8 1989 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 A0A1W2PP11 408 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 OR14I1A6ND48 311 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 TUBAL3A6NHL2 446 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 LGALS8O00214 317 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 MELTFP08582 738 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 P2RY4P51582 365 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CAPZA1P52907 286 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CLDN17P56750 224 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 QRFPP83859 136 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 VASH2Q86V25 355 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 CCDC36Q8IYA8 594 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 TMEM156Q8N614 296 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 OR5M8Q8NGP6 311 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 OR10R2Q8NGX6 335 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 KCNK7Q9Y2U2 307 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 SESN1Q9Y6P5 492 aa9.41□□□□□ -0.9
CUX1-205ENST00000425244 MED13Q9UHV7 2174 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 IGHV3-15A0A0B4J1V0 119 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 MFSD2BA6NFX1 497 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 OR2AT4A6NND4 320 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 ERCC1P07992 297 aaPredicted RBP9.4□□□□□ -0.9
CUX1-205ENST00000425244 RPA2P15927 270 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 IL13RA1P78552 427 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 BAMBIQ13145 260 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 SRSF6Q13247 344 aaKnown RBP9.4□□□□□ -0.9
CUX1-205ENST00000425244 SSPNQ14714 243 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 EXT1Q16394 746 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 FAM74A1Q5RGS3 127 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 RGS7BPQ6MZT1 257 aaPredicted RBP9.4□□□□□ -0.9
CUX1-205ENST00000425244 HDDC2Q7Z4H3 204 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 ADAD2Q8NCV1 583 aaKnown RBP9.4□□□□□ -0.9
CUX1-205ENST00000425244 OR52H1Q8NGJ2 320 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 DMRTA2Q96SC8 542 aa9.4□□□□□ -0.9
CUX1-205ENST00000425244 DOCK10Q96BY6 2186 aa9.4□□□□□ -0.91
CUX1-205ENST00000425244 EEF1E1-BLOC1S5C9J1V9 151 aa9.4□□□□□ -0.91
CUX1-205ENST00000425244 ETV2O00321 342 aaPredicted RBP9.4□□□□□ -0.91
CUX1-205ENST00000425244 DLL1O00548 723 aa9.4□□□□□ -0.91
CUX1-205ENST00000425244 CRTAPO75718 401 aaPredicted RBP9.4□□□□□ -0.91
CUX1-205ENST00000425244 CEACAM1P13688 526 aa9.4□□□□□ -0.91
CUX1-205ENST00000425244 SLC6A9P48067 706 aa9.4□□□□□ -0.91
CUX1-205ENST00000425244 Q0VFX4 171 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms