RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 INO80EQ8NBZ0 244 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-203ENST00000354674 OR4C16Q8NGL9 310 aa8.96□□□□□ -0.97
SYNE1-203ENST00000354674 PIGXQ8TBF5 258 aa8.96□□□□□ -0.97
SYNE1-203ENST00000354674 SYNPRQ8TBG9 265 aa8.96□□□□□ -0.97
SYNE1-203ENST00000354674 ZNF587Q96SQ5 575 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-203ENST00000354674 HCAR1Q9BXC0 346 aa8.96□□□□□ -0.97
SYNE1-203ENST00000354674 OR14J1Q9UGF5 321 aa8.96□□□□□ -0.97
SYNE1-203ENST00000354674 CAMK2AQ9UQM7 478 aa8.96□□□□□ -0.97
SYNE1-203ENST00000354674 TP53I11O14683 189 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 BCL2L11O43521 198 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 SOX8P57073 446 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 NCR3LG1Q68D85 454 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 RTL6Q6ICC9 239 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 TMPRSS11FQ6ZWK6 438 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 NRMQ8IXM6 262 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 TMEM104Q8NE00 496 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 BRIX1Q8TDN6 353 aaKnown RBP8.96□□□□□ -0.98
SYNE1-203ENST00000354674 ROBO4Q8WZ75 1007 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 PROK2Q9HC23 129 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 PRR13Q9NZ81 148 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 KCNIP3Q9Y2W7 256 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 WIF1Q9Y5W5 379 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 DCDC2BA2VCK2 349 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 RNF222A6NCQ9 220 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 ANKUB1A6NFN9 424 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 PNMTP11086 282 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 CPN1P15169 458 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 PGCP20142 388 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 CDK2P24941 298 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 MSX1P28360 303 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 CASRP41180 1078 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 SOX2P48431 317 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 RAG2P55895 527 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 AKR1C8PQ5T2L2 129 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 UQCC3Q6UW78 93 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 ACBD4Q8NC06 268 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 FOXRED1Q96CU9 486 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-203ENST00000354674 FER1L6-AS2Q96M78 137 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 SNHG12Q9BXW3 62 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 ANGPTL4Q9BY76 406 aa8.96□□□□□ -0.98
SYNE1-203ENST00000354674 HEATR5AQ86XA9 2040 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 KNTC1P50748 2209 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 RIF1Q5UIP0 2472 aaKnown RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 CPAMD8Q8IZJ3 1885 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 IGKV1D-42A0A075B6H8 117 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 IFNL4K9M1U5 179 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 NDUFB6O95139 128 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 CRABP1P29762 137 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 GRPRP30550 384 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 CDX1P47902 265 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 MECP2P51608 486 aaKnown RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 CLN3Q13286 438 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 INPP5JQ15735 1006 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 TOMM34Q15785 309 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 ZNF468Q5VIY5 522 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 FADS6Q8N9I5 356 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 ZNF485Q8NCK3 441 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 BHLHE23Q8NDY6 225 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 OR1J2Q8NGS2 313 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 PFN4Q8NHR9 129 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 HPSE2Q8WWQ2 592 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 OR51B6Q9H340 312 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 TUBA4BQ9H853 241 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 SEC61A2Q9H9S3 476 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 HINT3Q9NQE9 182 aaKnown RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 C20orf141Q9NUB4 165 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 TP53TG5Q9Y2B4 290 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 MED31Q9Y3C7 131 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 CNTRLQ7Z7A1 2325 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 FAM186AA6NE01 2351 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 A0A087WZY1 265 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 C5orf51A6NDU8 294 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 CDC40O60508 579 aaKnown RBP eCLIP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 VAMP1P23763 118 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 RPL29P47914 159 aaKnown RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 ZNF239Q16600 458 aaKnown RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 LPCAT3Q6P1A2 487 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 ZNF227Q86WZ6 799 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 KCNRGQ8N5I3 272 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 DCUN1D4Q92564 292 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 SGCZQ96LD1 299 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 WFIKKN1Q96NZ8 548 aa8.95□□□□□ -0.98
SYNE1-203ENST00000354674 EIF5A2Q9GZV4 153 aaKnown RBP8.95□□□□□ -0.98
SYNE1-203ENST00000354674 CBY3A6NI87 242 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 CDC42EP2O14613 210 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 SCAF4O95104 1147 aaKnown RBP8.94□□□□□ -0.98
SYNE1-203ENST00000354674 CD3DP04234 171 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 HOXB5P09067 269 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 SPARCP09486 303 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 HOXA5P20719 270 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 MAKP20794 623 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 TFPI2P48307 235 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 CDK5Q00535 292 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 PJVKQ0ZLH3 352 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 SLC25A53Q5H9E4 307 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 LY6G6FQ5SQ64 297 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 ZNF664Q8N3J9 261 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 SMIM3Q9BZL3 60 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 METTL7AQ9H8H3 244 aa8.94□□□□□ -0.98
SYNE1-203ENST00000354674 PARPBPQ9NWS1 579 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms