RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 H2BFMP0C1H6 154 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 MAGEA5P43359 124 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 KIR3DL2P43630 455 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 CLDN15P56746 228 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 PPIAP62937 165 aaKnown RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 SRSF4Q08170 494 aaKnown RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 OR2F1Q13607 317 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 ZNF345Q14585 488 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 RSPO4Q2I0M5 234 aaPredicted RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 C10orf128Q5T292 105 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 OR7E24Q6IFN5 339 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 LIN54Q6MZP7 749 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 C11orf88Q6PI97 169 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 ALKAL2Q6UX46 152 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 RHOUQ7L0Q8 258 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 SERPINA12Q8IW75 414 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 TMEM123Q8N131 208 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 ZFP62Q8NB50 900 aaPredicted RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 OR1S1Q8NH92 325 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 RNF133Q8WVZ7 376 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 PCNPQ8WW12 178 aaKnown RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 RGP1Q92546 391 aaPredicted RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 FXYD6Q9H0Q3 95 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 SLC25A18Q9H1K4 315 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 TMEM138Q9NPI0 162 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 FLVCR1Q9Y5Y0 555 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 A0A1B0GTH9 108 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 NUDT19A8MXV4 375 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 GOSR2O14653 212 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 CELA3AP09093 270 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 VSIG10L2P0DP72 767 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 WT1P19544 449 aaPredicted RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 LHX2P50458 406 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 TAS2R19P59542 299 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 SLC10A1Q14973 349 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 WDR38Q5JTN6 314 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 ZNF660Q6AZW8 331 aaPredicted RBP11.3□□□□□ -0.6
CLK3-201ENST00000345005 ABLIM2Q6H8Q1 611 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 CATSPERDQ86XM0 798 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 OR4C16Q8NGL9 310 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 SLAMF6Q96DU3 332 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 CXorf58Q96LI9 332 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 EXO5Q9H790 373 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 ACKR4Q9NPB9 350 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 CENPMQ9NSP4 180 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 COQ3Q9NZJ6 369 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 POLR1DQ9Y2S0 133 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 R4GMQ9 66 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 FREM2Q5SZK8 3169 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 ZNF716A6NP11 495 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 CYTIPO60759 359 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 ACTL6AO96019 429 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 CD8AP01732 235 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 SLC25A4P12235 298 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 ZNF35P13682 527 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 GTF2F2P13984 249 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 MPGP29372 298 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 CDAP32320 146 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 TNFSF10P50591 281 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 CLDN18P56856 261 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 LSM6P62312 80 aaKnown RBP11.29□□□□□ -0.6
CLK3-201ENST00000345005 POLR2GP62487 172 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLK3-201ENST00000345005 CORO6Q6QEF8 472 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.29□□□□□ -0.6
CLK3-201ENST00000345005 C20orf196Q8IYI0 205 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 TMEM229BQ8NBD8 167 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 ROBO4Q8WZ75 1007 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 PIGMQ9H3S5 423 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 COMMD9Q9P000 198 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 FOXD3Q9UJU5 478 aaPredicted RBP11.29□□□□□ -0.6
CLK3-201ENST00000345005 GDF2Q9UK05 429 aaPredicted RBP11.29□□□□□ -0.6
CLK3-201ENST00000345005 GTF2A1LQ9UNN4 478 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 LHFPL6Q9Y693 200 aa11.29□□□□□ -0.6
CLK3-201ENST00000345005 LOC100289279A0A1B0GTE1 492 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 KANTRA0A1W2PQU2 76 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 DHHO43323 396 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 SRSF10O75494 262 aaKnown RBP11.28□□□□□ -0.6
CLK3-201ENST00000345005 PNPP00491 289 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 ITGB2P05107 769 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 ZNF708P17019 499 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 ZNF84P51523 738 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 H2BFSP57053 126 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 ZMYND11Q15326 602 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 SGCAQ16586 387 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 C4orf46Q504U0 113 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 SFRP5Q5T4F7 317 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 KLHL24Q6TFL4 600 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 IGFL2Q6UWQ7 119 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 FOXL2NBQ6ZUU3 175 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 MUC20Q8N307 709 aaPredicted RBP11.28□□□□□ -0.6
CLK3-201ENST00000345005 C12orf45Q8N5I9 185 aaPredicted RBP11.28□□□□□ -0.6
CLK3-201ENST00000345005 FDCSPQ8NFU4 85 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 NELFAQ9H3P2 528 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 RASL12Q9NYN1 266 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 NDRG3Q9UGV2 375 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 A0A087WV48 116 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 TMEM269A0A1B0GVZ9 245 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 RAB19A4D1S5 217 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 MEGF11A6BM72 1044 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 CTAG2O75638 210 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms