RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SELENOVP59797 346 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 HNF4GQ14541 408 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 PRSS27Q9BQR3 290 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 KCNK15Q9H427 330 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 MCTS1Q9ULC4 181 aaKnown RBP17.31■□□□□ 0.36
USP48-201ENST00000308271 HSD17B6O14756 317 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 MRPL33O75394 65 aaKnown RBP17.31■□□□□ 0.36
USP48-201ENST00000308271 HOXD4P09016 255 aaPredicted RBP17.31■□□□□ 0.36
USP48-201ENST00000308271 TMIGD3P0DMS9 266 aaPredicted RBP17.31■□□□□ 0.36
USP48-201ENST00000308271 GSK3AP49840 483 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 DCAF12L2Q5VW00 463 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 ZNF787Q6DD87 383 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 PRSS41Q7RTY9 318 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 MRGPREQ86SM8 312 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 ZNF429Q86V71 674 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 ARHGAP5-AS1Q96IT6 56 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 CNTD2Q9H8S5 307 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 ADAP1O75689 374 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 GLRA1P23415 457 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 PRSS53Q2L4Q9 553 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 PPP1R3BQ86XI6 285 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 BAGE3Q86Y29 109 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 BAGE2Q86Y30 109 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 CES1P1Q9UKY3 287 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 RCL1Q9Y2P8 373 aaKnown RBP17.31■□□□□ 0.36
USP48-201ENST00000308271 THSD7AQ9UPZ6 1657 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 COL11A2P13942 1736 aaPredicted RBP17.31■□□□□ 0.36
USP48-201ENST00000308271 OTX2P32243 289 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 LHX4Q969G2 390 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 HHIPQ96QV1 700 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 CD207Q9UJ71 328 aa17.31■□□□□ 0.36
USP48-201ENST00000308271 TRIP12Q14669 1992 aaPredicted RBP17.31■□□□□ 0.36
USP48-201ENST00000308271 SCRG1O75711 98 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 PDGFBP01127 241 aaPredicted RBP17.3■□□□□ 0.36
USP48-201ENST00000308271 PAX6P26367 422 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 ELLP55199 621 aaPredicted RBP17.3■□□□□ 0.36
USP48-201ENST00000308271 DCDP81605 110 aaKnown RBP17.3■□□□□ 0.36
USP48-201ENST00000308271 NAAAQ02083 359 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 AWAT1Q58HT5 328 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 THNSL2Q86YJ6 484 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 USB1Q9BQ65 265 aaKnown RBP17.3■□□□□ 0.36
USP48-201ENST00000308271 NEUROG3Q9Y4Z2 214 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 NRXN2Q9P2S2 1712 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 ALOX12BO75342 701 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 ABOP16442 354 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 THBS4P35443 961 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 DUSP2Q05923 314 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 MOGAT2Q3SYC2 334 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 FAM199XQ6PEV8 388 aaPredicted RBP17.3■□□□□ 0.36
USP48-201ENST00000308271 IL22RA1Q8N6P7 574 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 OR51F2Q8NH61 342 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 OR51H1Q8NH63 302 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 OIT3Q8WWZ8 545 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 WSB1Q9Y6I7 421 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 COL4A5P29400 1685 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 GUSBP08236 651 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 UBAC2Q8NBM4 344 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 RPS4Y2Q8TD47 263 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 OXGR1Q96P68 337 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 SMIM7Q9BQ49 75 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 MIOXQ9UGB7 285 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 FAM74A7A6NL05 159 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 FGF7P21781 194 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 FAM74A3Q4VXF1 159 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 LHFPL2Q6ZUX7 228 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 OR52N4Q8NGI2 321 aa17.3■□□□□ 0.36
USP48-201ENST00000308271 LINC01553A4QN01 128 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 OR2W5A6NFC9 320 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 FGF2P09038 288 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 SUMO3P55854 103 aaPredicted RBP17.29■□□□□ 0.36
USP48-201ENST00000308271 DHODHQ02127 395 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 MRGPRX4Q96LA9 322 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 MFNGO00587 321 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 CAPZBP47756 277 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 ZNF117Q03924 483 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 ENDOGQ14249 297 aaKnown RBP17.29■□□□□ 0.36
USP48-201ENST00000308271 NUBPLQ8TB37 319 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 RAB9BQ9NP90 201 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 MRPS2Q9Y399 296 aaKnown RBP17.29■□□□□ 0.36
USP48-201ENST00000308271 TMED3Q9Y3Q3 217 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.29■□□□□ 0.36
USP48-201ENST00000308271 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.29■□□□□ 0.36
USP48-201ENST00000308271 CTLA4P16410 223 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 TCN2P20062 427 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 KITLGP21583 273 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 FOLR3P41439 243 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 TMEM33P57088 247 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 SHBQ15464 509 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 NKAIN2Q5VXU1 208 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 PUSL1Q8N0Z8 303 aaKnown RBP17.29■□□□□ 0.36
USP48-201ENST00000308271 OR10AC1Q8NH08 325 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 CRLF2Q9HC73 371 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 SLCO1B1Q9Y6L6 691 aa17.29■□□□□ 0.36
USP48-201ENST00000308271 IGHV3-20A0A0C4DH32 117 aa17.28■□□□□ 0.36
USP48-201ENST00000308271 C7orf77A4D0Y5 90 aa17.28■□□□□ 0.36
USP48-201ENST00000308271 HPP00738 406 aa17.28■□□□□ 0.36
USP48-201ENST00000308271 HLA-DOBP13765 273 aa17.28■□□□□ 0.36
USP48-201ENST00000308271 NANOS3P60323 173 aaKnown RBP17.28■□□□□ 0.36
USP48-201ENST00000308271 RPS15P62841 145 aaKnown RBP17.28■□□□□ 0.36
USP48-201ENST00000308271 FUT5Q11128 374 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms