RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ZNF124Q15973 351 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 CHRFAM7AQ494W8 412 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 C1orf100Q5SVJ3 147 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 STOML3Q8TAV4 291 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 EDAQ92838 391 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 LSM5Q9Y4Y9 91 aaKnown RBP11.21□□□□□ -0.61
LIG1-201ENST00000263274 KLF2Q9Y5W3 355 aaPredicted RBP11.21□□□□□ -0.61
LIG1-201ENST00000263274 IGHV1OR15-9A0A0B4J2B8 117 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 A0A1B0GTI1 187 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 DUS4LO95620 317 aaKnown RBP11.21□□□□□ -0.62
LIG1-201ENST00000263274 FSTP19883 344 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 LAP3P28838 519 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 GABREP78334 506 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 RNF133Q8WVZ7 376 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 TOMM40LQ969M1 308 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 WDR77Q9BQA1 342 aaPredicted RBP11.21□□□□□ -0.62
LIG1-201ENST00000263274 URM1Q9BTM9 101 aaKnown RBP11.21□□□□□ -0.62
LIG1-201ENST00000263274 OR5AC2Q9NZP5 309 aa11.21□□□□□ -0.62
LIG1-201ENST00000263274 IGHV1OR21-1A0A087WYE8 117 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 IGKV3D-11A0A0A0MRZ8 115 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 QDPRP09417 244 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 SNU13P55769 128 aaKnown RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 RAB32Q13637 225 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 RBMS3Q6XE24 437 aaKnown RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 PNLDC1Q8NA58 520 aaKnown RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 RRNAD1Q96FB5 475 aaKnown RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 KCNK17Q96T54 332 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 TWSG1Q9GZX9 223 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 GSN-AS1Q9NRJ2 163 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 A0A0A6YYH2 397 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 IGHV3-15A0A0B4J1V0 119 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 A0A1W2PQD3 144 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 A6NJ64 397 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 TXNL1O43396 289 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 BPNT1O95861 308 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 KLK2P20151 261 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 CD27P26842 260 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 GALNSP34059 522 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 CX3CR1P49238 355 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 MMP16P51512 607 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 SNRPEP62304 92 aaKnown RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 CLEC18BQ6UXF7 455 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 PEG10Q86TG7 708 aaKnown RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 BATF2Q8N1L9 274 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 ZDHHC22Q8N966 263 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 OR8B12Q8NGG6 310 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 KCNG3Q8TAE7 436 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 RNF141Q8WVD5 230 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 SGK3Q96BR1 496 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 RBM24Q9BX46 236 aaKnown RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 TLNRD1Q9H1K6 362 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 FAM206AQ9NX38 181 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 LMO7DNF2Z398 122 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 RAMP1O60894 148 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 MED6O75586 246 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 ACTL6AO96019 429 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 IGHG1P01857 330 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 SLC25A4P12235 298 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 NFYBP25208 207 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 TDGQ13569 410 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 TMEM128Q5BJH2 165 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 ZSCAN4Q8NAM6 433 aaPredicted RBP11.2□□□□□ -0.62
LIG1-201ENST00000263274 OR10G3Q8NGC4 313 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 MFSD8Q8NHS3 518 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 MRGPRFQ96AM1 343 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 PIK3IP1Q96FE7 263 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 LPAR5Q9H1C0 372 aa11.2□□□□□ -0.62
LIG1-201ENST00000263274 FTCDNL1E5RQL4 147 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 OR2J2O76002 312 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 FCGR2AP12318 317 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 RBMXP38159 391 aaKnown RBP11.19□□□□□ -0.62
LIG1-201ENST00000263274 CLDN17P56750 224 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 RIPPLY1Q0D2K3 151 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 Q3ZCU0 254 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 LDLRAD3Q86YD5 345 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 ZNF160Q9HCG1 818 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 ZNF319Q9P2F9 582 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 LDLRAD4O15165 306 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 ITGA3P26006 1051 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 APOBEC1P41238 236 aaKnown RBP11.19□□□□□ -0.62
LIG1-201ENST00000263274 ID4P47928 161 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 FXYD4P59646 89 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 CYCSP99999 105 aaKnown RBP11.19□□□□□ -0.62
LIG1-201ENST00000263274 CFHR1Q03591 330 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 PLAC9Q5JTB6 97 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 NUBPLQ8TB37 319 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 EDEM2Q9BV94 578 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 H0YIZ8 118 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 HIST1H1DP16402 221 aaKnown RBP11.19□□□□□ -0.62
LIG1-201ENST00000263274 RAB6AP20340 208 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 ZNF345Q14585 488 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 SMCO1Q147U7 214 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 OR10S1Q8NGN2 331 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 FBXO17Q96EF6 278 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 OR10C1Q96KK4 312 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 OR6C1Q96RD1 312 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 OR10A2Q9H208 303 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 FN3KRPQ9HA64 309 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 MIOXQ9UGB7 285 aa11.19□□□□□ -0.62
LIG1-201ENST00000263274 MED19A0JLT2 244 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms