RNA–Protein interactions for RNA: snR53

snR53, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR53, Length 91 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR53	snR53	YPT1	P01123	206 aa	Known RBP	0.2	□□□□□ -2.38
snR53	snR53	LOT5	P34234	306 aa		0.2	□□□□□ -2.38
snR53	snR53	APD1	P38281	316 aa		0.2	□□□□□ -2.38
snR53	snR53	GND1	P38720	489 aa	Known RBP	0.2	□□□□□ -2.38
snR53	snR53	YGL117W	P53133	265 aa		0.2	□□□□□ -2.38
snR53	snR53	TYW3	P53177	273 aa		0.2	□□□□□ -2.38
snR53	snR53	YDR179W-A	Q03983	463 aa		0.2	□□□□□ -2.38
snR53	snR53	TMA46	Q12000	345 aa	Known RBP	0.2	□□□□□ -2.38
snR53	snR53	HEM1	P09950	548 aa	Predicted RBP	0.19	□□□□□ -2.38
snR53	snR53	AQY1	P0CD91	305 aa		0.19	□□□□□ -2.38
snR53	snR53	BST1	P43571	1029 aa		0.19	□□□□□ -2.38
snR53	snR53	RSC3	Q06639	885 aa		0.19	□□□□□ -2.38
snR53	snR53	YDL086W	Q07505	273 aa		0.19	□□□□□ -2.38
snR53	snR53	DSE3	Q08729	430 aa		0.19	□□□□□ -2.38
snR53	snR53	YOR022C	Q12204	715 aa		0.19	□□□□□ -2.38
snR53	snR53	CLF1	Q12309	687 aa	Predicted RBP	0.19	□□□□□ -2.38
snR53	snR53	AIM17	P23180	465 aa	Known RBP	0.18	□□□□□ -2.38
snR53	snR53	CYS3	P31373	394 aa	Known RBP	0.18	□□□□□ -2.38
snR53	snR53	PPH3	P32345	308 aa		0.18	□□□□□ -2.38
snR53	snR53	SNF7	P39929	240 aa	Known RBP	0.18	□□□□□ -2.38
snR53	snR53	CFD1	P40558	293 aa		0.18	□□□□□ -2.38
snR53	snR53	YJL043W	P47053	257 aa		0.18	□□□□□ -2.38
snR53	snR53	YMR034C	Q05131	434 aa	Predicted RBP	0.18	□□□□□ -2.38
snR53	snR53	STP4	Q07351	490 aa		0.18	□□□□□ -2.38
snR53	snR53	UBX3	Q12229	455 aa		0.18	□□□□□ -2.38
snR53	snR53	GPR1	Q12361	961 aa		0.18	□□□□□ -2.38
snR53	snR53	LEU2	P04173	364 aa	Predicted RBP	0.17	□□□□□ -2.38
snR53	snR53	CYC8	P14922	966 aa		0.17	□□□□□ -2.38
snR53	snR53	AFR1	P33304	620 aa		0.17	□□□□□ -2.38
snR53	snR53	APL3	P38065	1025 aa		0.17	□□□□□ -2.38
snR53	snR53	YHL050C	P38721	697 aa		0.17	□□□□□ -2.38
snR53	snR53	CRP1	P38845	465 aa	Known RBP	0.17	□□□□□ -2.38
snR53	snR53	YHR219W	P38900	624 aa		0.17	□□□□□ -2.38
snR53	snR53	ECM1	P39715	212 aa		0.17	□□□□□ -2.38
snR53	snR53	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	0.17	□□□□□ -2.38	not detected
snR53	snR53	MTR3	P48240	250 aa	Predicted RBP	0.17	□□□□□ -2.38
snR53	snR53	COP1	P53622	1201 aa	Known RBP	0.17	□□□□□ -2.38
snR53	snR53	CPR8	P53728	308 aa		0.17	□□□□□ -2.38
snR53	snR53	NGL2	Q03264	515 aa	Known RBP	0.17	□□□□□ -2.38
snR53	snR53	RPC34	P32910	317 aa		0.16	□□□□□ -2.38
snR53	snR53	YBR184W	P38299	523 aa		0.16	□□□□□ -2.38
snR53	snR53	YHR112C	P38716	378 aa		0.16	□□□□□ -2.38
snR53	snR53	MTC6	P38849	526 aa		0.16	□□□□□ -2.38
snR53	snR53	MBP1	P39678	833 aa		0.16	□□□□□ -2.38
snR53	snR53	RPS26A	P39938	119 aa	Known RBP	0.16	□□□□□ -2.38
snR53	snR53	RPS26B	P39939	119 aa	Known RBP	0.16	□□□□□ -2.38
snR53	snR53	PRC1	P00729	532 aa		0.15	□□□□□ -2.39
snR53	snR53	PMA2	P19657	947 aa		0.15	□□□□□ -2.39
snR53	snR53	ERG6	P25087	383 aa	Known RBP	0.15	□□□□□ -2.39
snR53	snR53	YBP2	P53169	641 aa		0.15	□□□□□ -2.39
snR53	snR53	YLR352W	Q06479	807 aa		0.15	□□□□□ -2.39
snR53	snR53	BSP1	Q06604	576 aa		0.15	□□□□□ -2.39
snR53	snR53	RKI1	Q12189	258 aa		0.15	□□□□□ -2.39
snR53	snR53	YLR111W	Q12528	110 aa		0.15	□□□□□ -2.39
snR53	snR53	HRP1	Q99383	534 aa	Known RBP	0.15	□□□□□ -2.39
snR53	snR53	ADE8	P04161	214 aa		0.14	□□□□□ -2.39
snR53	snR53	RPS9B	P05755	195 aa	Known RBP	0.14	□□□□□ -2.39
snR53	snR53	TOP3	P13099	656 aa		0.14	□□□□□ -2.39
snR53	snR53	SWH1	P35845	1188 aa		0.14	□□□□□ -2.39
snR53	snR53	TRZ1	P36159	838 aa	Predicted RBP	0.14	□□□□□ -2.39
snR53	snR53	YRO2	P38079	344 aa		0.14	□□□□□ -2.39
snR53	snR53	ERT1	P38140	529 aa		0.14	□□□□□ -2.39
snR53	snR53	RIM4	P38741	713 aa		0.14	□□□□□ -2.39
snR53	snR53	PRP31	P49704	494 aa	Predicted RBP	0.14	□□□□□ -2.39
snR53	snR53	DIP5	P53388	608 aa		0.14	□□□□□ -2.39
snR53	snR53	EEB1	Q02891	456 aa		0.14	□□□□□ -2.39
snR53	snR53	ESC2	Q06340	456 aa		0.14	□□□□□ -2.39
snR53	snR53	YDR306C	Q06640	478 aa		0.14	□□□□□ -2.39
snR53	snR53	CDC3	P32457	520 aa	Known RBP	0.13	□□□□□ -2.39
snR53	snR53	HES1	P35843	434 aa		0.13	□□□□□ -2.39
snR53	snR53	THI12	P42883	340 aa		0.13	□□□□□ -2.39
snR53	snR53	THI5	P43534	340 aa		0.13	□□□□□ -2.39
snR53	snR53	GUS1	P46655	708 aa	Known RBP RIP-Chip data	0.13	□□□□□ -2.39	not detected
snR53	snR53	THI11	P47183	340 aa		0.13	□□□□□ -2.39
snR53	snR53	SPO20	Q04359	397 aa		0.13	□□□□□ -2.39
snR53	snR53	THI13	Q07748	340 aa		0.13	□□□□□ -2.39
snR53	snR53	RPL7A	P05737	244 aa	Known RBP	0.12	□□□□□ -2.39
snR53	snR53	HSL7	P38274	827 aa		0.12	□□□□□ -2.39
snR53	snR53	GET2	P40056	285 aa		0.12	□□□□□ -2.39
snR53	snR53	GID8	P40208	455 aa		0.12	□□□□□ -2.39
snR53	snR53	CCM1	P48237	864 aa	Predicted RBP	0.12	□□□□□ -2.39
snR53	snR53	TPO3	Q06451	622 aa		0.12	□□□□□ -2.39
snR53	snR53	RPL7B	Q12213	244 aa	Known RBP	0.12	□□□□□ -2.39
snR53	snR53	SEC3	P33332	1336 aa	Known RBP	0.12	□□□□□ -2.39
snR53	snR53	RAD18	P10862	487 aa		0.11	□□□□□ -2.39
snR53	snR53	ADE2	P21264	571 aa	Known RBP	0.11	□□□□□ -2.39
snR53	snR53	YSH1	Q06224	779 aa	Predicted RBP	0.11	□□□□□ -2.39
snR53	snR53	SUB2	Q07478	446 aa	Known RBP	0.11	□□□□□ -2.39
snR53	snR53	MLH2	Q07980	695 aa		0.11	□□□□□ -2.39
snR53	snR53	TLG2	Q08144	397 aa		0.11	□□□□□ -2.39
snR53	snR53	FAB1	P34756	2278 aa		0.1	□□□□□ -2.39
snR53	snR53	CPR3	P25719	182 aa		0.1	□□□□□ -2.39
snR53	snR53	AAR2	P32357	355 aa	Predicted RBP	0.1	□□□□□ -2.39
snR53	snR53	BCS1	P32839	456 aa		0.1	□□□□□ -2.39
snR53	snR53	RPT3	P33298	428 aa	Known RBP	0.1	□□□□□ -2.39
snR53	snR53	MRPL7	P36519	292 aa		0.1	□□□□□ -2.39
snR53	snR53	EXO1	P39875	702 aa		0.1	□□□□□ -2.39
snR53	snR53	THI6	P41835	540 aa		0.1	□□□□□ -2.39
snR53	snR53	MPS3	P47069	682 aa		0.1	□□□□□ -2.39
snR53	snR53	TRS23	Q03784	219 aa		0.1	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 37.5 ms