RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C ARG5,6Q01217 863 aa2.27□□□□□ -2.05
VPS54YDR027C MCM21Q06675 368 aa2.27□□□□□ -2.05
VPS54YDR027C NTE1Q04958 1679 aa2.27□□□□□ -2.05
VPS54YDR027C MUP3P38734 546 aa2.26□□□□□ -2.05
VPS54YDR027C YFL052WP43551 465 aa2.26□□□□□ -2.05
VPS54YDR027C FLC1Q08967 793 aa2.26□□□□□ -2.05
VPS54YDR027C ZRT2Q12436 422 aa2.26□□□□□ -2.05
VPS54YDR027C PTP1P25044 335 aa2.26□□□□□ -2.05
VPS54YDR027C UBS1P38290 277 aa2.26□□□□□ -2.05
VPS54YDR027C YDR338CQ05497 695 aa2.26□□□□□ -2.05
VPS54YDR027C USV1Q12132 391 aa2.26□□□□□ -2.05
VPS54YDR027C OSW1Q08692 278 aa2.25□□□□□ -2.05
VPS54YDR027C MLH3Q12083 715 aa2.25□□□□□ -2.05
VPS54YDR027C HRP1Q99383 534 aaKnown RBP2.25□□□□□ -2.05
VPS54YDR027C RPA135P22138 1203 aaKnown RBP2.25□□□□□ -2.05
VPS54YDR027C KCC4P25389 1037 aa2.25□□□□□ -2.05
VPS54YDR027C FUB1P25659 250 aa2.25□□□□□ -2.05
VPS54YDR027C GMH1P36125 273 aa2.25□□□□□ -2.05
VPS54YDR027C PAM1P37304 830 aaKnown RBP2.25□□□□□ -2.05
VPS54YDR027C GAT1P43574 510 aa2.25□□□□□ -2.05
VPS54YDR027C THR1P17423 357 aaKnown RBP2.24□□□□□ -2.05
VPS54YDR027C GAL11P19659 1081 aa2.24□□□□□ -2.05
VPS54YDR027C YHR020WP38708 688 aaKnown RBP2.24□□□□□ -2.05
VPS54YDR027C CRP1P38845 465 aaKnown RBP2.24□□□□□ -2.05
VPS54YDR027C YJL049WP47048 450 aa2.24□□□□□ -2.05
VPS54YDR027C RTA1P53047 317 aa2.24□□□□□ -2.05
VPS54YDR027C CAN1P04817 590 aa2.24□□□□□ -2.05
VPS54YDR027C ERG11P10614 530 aa2.24□□□□□ -2.05
VPS54YDR027C ERG6P25087 383 aaKnown RBP2.24□□□□□ -2.05
VPS54YDR027C RSP5P39940 809 aaKnown RBP2.24□□□□□ -2.05
VPS54YDR027C BNA2P47125 453 aa2.24□□□□□ -2.05
VPS54YDR027C REC102Q02721 264 aa2.24□□□□□ -2.05
VPS54YDR027C PDR15Q04182 1529 aaKnown RBP2.24□□□□□ -2.05
VPS54YDR027C RPN10P38886 268 aaKnown RBP2.24□□□□□ -2.05
VPS54YDR027C LTP1P40347 161 aa2.24□□□□□ -2.05
VPS54YDR027C TY4A-JP47023 414 aa2.24□□□□□ -2.05
VPS54YDR027C YLR149CQ99296 730 aa2.24□□□□□ -2.05
VPS54YDR027C ABF1P14164 731 aa2.23□□□□□ -2.05
VPS54YDR027C MIP6P38760 659 aaKnown RBP2.23□□□□□ -2.05
VPS54YDR027C NET1P47035 1189 aa2.23□□□□□ -2.05
VPS54YDR027C BNA3P47039 444 aaKnown RBP2.23□□□□□ -2.05
VPS54YDR027C HUL5P53119 910 aa2.23□□□□□ -2.05
VPS54YDR027C NPY1P53164 384 aa2.23□□□□□ -2.05
VPS54YDR027C SPC98P53540 846 aa2.23□□□□□ -2.05
VPS54YDR027C FMP30Q02883 468 aa2.23□□□□□ -2.05
VPS54YDR027C STE12P13574 688 aa2.23□□□□□ -2.05
VPS54YDR027C RNR1P21524 888 aaKnown RBP2.23□□□□□ -2.05
VPS54YDR027C PEX1P24004 1043 aa2.23□□□□□ -2.05
VPS54YDR027C SET3P36124 751 aa2.23□□□□□ -2.05
VPS54YDR027C GET2P40056 285 aa2.23□□□□□ -2.05
VPS54YDR027C XBP1P40489 647 aa2.23□□□□□ -2.05
VPS54YDR027C COX18P53239 316 aa2.23□□□□□ -2.05
VPS54YDR027C RGC1Q06108 1083 aaKnown RBP2.23□□□□□ -2.05
VPS54YDR027C DIA2Q08496 732 aaPredicted RBP2.23□□□□□ -2.05
VPS54YDR027C PGK1P00560 416 aaKnown RBP2.22□□□□□ -2.05
VPS54YDR027C NUP1P20676 1076 aa2.22□□□□□ -2.05
VPS54YDR027C SCS3P53012 380 aa2.22□□□□□ -2.05
VPS54YDR027C YGR151CP53287 111 aa2.22□□□□□ -2.05
VPS54YDR027C Q0142Q9ZZW4 58 aa2.22□□□□□ -2.05
VPS54YDR027C SAT4P25333 603 aaKnown RBP2.22□□□□□ -2.05
VPS54YDR027C PIG2P40187 538 aa2.22□□□□□ -2.05
VPS54YDR027C RGT2Q12300 763 aa2.22□□□□□ -2.05
VPS54YDR027C ADE5,7P07244 802 aaKnown RBP2.21□□□□□ -2.06
VPS54YDR027C ORC1P54784 914 aaPredicted RBP2.21□□□□□ -2.06
VPS54YDR027C HMO1Q03973 246 aaKnown RBP2.21□□□□□ -2.06
VPS54YDR027C STO1P34160 861 aaKnown RBP2.21□□□□□ -2.06
VPS54YDR027C MTC2P34246 357 aa2.21□□□□□ -2.06
VPS54YDR027C YDL086WQ07505 273 aa2.21□□□□□ -2.06
VPS54YDR027C BMS1Q08965 1183 aaKnown RBP2.21□□□□□ -2.06
VPS54YDR027C UGP1P32861 499 aaKnown RBP2.2□□□□□ -2.06
VPS54YDR027C MCD4P36051 919 aa2.2□□□□□ -2.06
VPS54YDR027C YMC2P38087 329 aa2.2□□□□□ -2.06
VPS54YDR027C KSP1P38691 1029 aaKnown RBP2.2□□□□□ -2.06
VPS54YDR027C PMC1P38929 1173 aaPredicted RBP2.2□□□□□ -2.06
VPS54YDR027C GDH3P39708 457 aa2.2□□□□□ -2.06
VPS54YDR027C NOP9P47077 666 aaKnown RBP2.2□□□□□ -2.06
VPS54YDR027C RPN7Q06103 429 aaKnown RBP2.2□□□□□ -2.06
VPS54YDR027C ECM3Q99252 613 aa2.2□□□□□ -2.06
VPS54YDR027C PRP28P23394 588 aa2.2□□□□□ -2.06
VPS54YDR027C BCS1P32839 456 aa2.2□□□□□ -2.06
VPS54YDR027C BIT2P38346 545 aa2.2□□□□□ -2.06
VPS54YDR027C NOP7P53261 605 aaKnown RBP2.2□□□□□ -2.06
VPS54YDR027C SNP1Q00916 300 aaPredicted RBP2.2□□□□□ -2.06
VPS54YDR027C CHS5Q12114 671 aaKnown RBP2.2□□□□□ -2.06
VPS54YDR027C CHD1P32657 1468 aa2.2□□□□□ -2.06
VPS54YDR027C YKR051WP36142 418 aa2.19□□□□□ -2.06
VPS54YDR027C RSC8P43609 557 aaKnown RBP2.19□□□□□ -2.06
VPS54YDR027C MPS1P54199 764 aa2.19□□□□□ -2.06
VPS54YDR027C THI22Q06490 572 aa2.19□□□□□ -2.06
VPS54YDR027C APN1P22936 367 aa2.19□□□□□ -2.06
VPS54YDR027C HSL7P38274 827 aa2.19□□□□□ -2.06
VPS54YDR027C GID8P40208 455 aa2.19□□□□□ -2.06
VPS54YDR027C ASN1P49089 572 aaKnown RBP2.19□□□□□ -2.06
VPS54YDR027C PCL10P53124 433 aa2.19□□□□□ -2.06
VPS54YDR027C MDM20Q12387 796 aaKnown RBP2.19□□□□□ -2.06
VPS54YDR027C SIN3P22579 1536 aa2.18□□□□□ -2.06
VPS54YDR027C PHO5P00635 467 aa2.18□□□□□ -2.06
VPS54YDR027C CIT2P08679 460 aa2.18□□□□□ -2.06
VPS54YDR027C YMC1P32331 307 aa2.18□□□□□ -2.06
VPS54YDR027C APL3P38065 1025 aa2.18□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 24.4 ms