RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CCDC57Q2TAC2 916 aa22.02■■□□□ 1.12
CLN3-263ENST00000637871 L1TD1Q5T7N2 865 aaKnown RBP22.02■■□□□ 1.12
CLN3-263ENST00000637871 C2CD5Q86YS7 1000 aa22.02■■□□□ 1.12
CLN3-263ENST00000637871 FOXD4L1Q9NU39 408 aa22.02■■□□□ 1.12
CLN3-263ENST00000637871 AKAP2Q9Y2D5 859 aa22.02■■□□□ 1.12
CLN3-263ENST00000637871 CHMP3Q9Y3E7 222 aa22.02■■□□□ 1.12
CLN3-263ENST00000637871 DLEC1Q9Y238 1755 aa22.02■■□□□ 1.12
CLN3-263ENST00000637871 CSF1RP07333 972 aa22.02■■□□□ 1.11
CLN3-263ENST00000637871 DPEP1P16444 411 aa22.02■■□□□ 1.11
CLN3-263ENST00000637871 ATG9AQ7Z3C6 839 aa22.02■■□□□ 1.11
CLN3-263ENST00000637871 TLR7Q9NYK1 1049 aaKnown RBP22.02■■□□□ 1.11
CLN3-263ENST00000637871 HMG20BQ9P0W2 317 aa22.02■■□□□ 1.11
CLN3-263ENST00000637871 CD2APQ9Y5K6 639 aa22.02■■□□□ 1.11
CLN3-263ENST00000637871 PDE8AO60658 829 aa22.01■■□□□ 1.11
CLN3-263ENST00000637871 PDIA4P13667 645 aaKnown RBP22.01■■□□□ 1.11
CLN3-263ENST00000637871 PDE6BP35913 854 aa22.01■■□□□ 1.11
CLN3-263ENST00000637871 NECTIN1Q15223 517 aa22.01■■□□□ 1.11
CLN3-263ENST00000637871 LRRFIP1Q32MZ4 808 aaKnown RBP22.01■■□□□ 1.11
CLN3-263ENST00000637871 ZSCAN31Q96LW9 406 aaPredicted RBP22.01■■□□□ 1.11
CLN3-263ENST00000637871 NLRP3Q96P20 1036 aa22.01■■□□□ 1.11
CLN3-263ENST00000637871 CTSWP56202 376 aa22■■□□□ 1.11
CLN3-263ENST00000637871 NMIQ13287 307 aaPredicted RBP22■■□□□ 1.11
CLN3-263ENST00000637871 SYT17Q9BSW7 474 aa22■■□□□ 1.11
CLN3-263ENST00000637871 CEP126Q9P2H0 1117 aa22■■□□□ 1.11
CLN3-263ENST00000637871 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22■■□□□ 1.11
CLN3-263ENST00000637871 TSGA10IPQ3SY00 556 aa21.99■■□□□ 1.11
CLN3-263ENST00000637871 VPS53Q5VIR6 699 aa21.99■■□□□ 1.11
CLN3-263ENST00000637871 SLC51AQ86UW1 340 aa21.99■■□□□ 1.11
CLN3-263ENST00000637871 TTC14Q96N46 770 aa21.99■■□□□ 1.11
CLN3-263ENST00000637871 LIMCH1Q9UPQ0 1083 aa21.99■■□□□ 1.11
CLN3-263ENST00000637871 MED23Q9ULK4 1368 aa21.99■■□□□ 1.11
CLN3-263ENST00000637871 BAG4O95429 457 aaKnown RBP21.98■■□□□ 1.11
CLN3-263ENST00000637871 CRY2Q49AN0 593 aa21.98■■□□□ 1.11
CLN3-263ENST00000637871 ZSWIM6Q9HCJ5 1215 aa21.98■■□□□ 1.11
CLN3-263ENST00000637871 CYP46A1Q9Y6A2 500 aa21.98■■□□□ 1.11
CLN3-263ENST00000637871 BRCA1P38398 1863 aaKnown RBP21.98■■□□□ 1.11
CLN3-263ENST00000637871 KLRG2A4D1S0 409 aaPredicted RBP21.98■■□□□ 1.11
CLN3-263ENST00000637871 SRGNP10124 158 aa21.98■■□□□ 1.11
CLN3-263ENST00000637871 HSP90B1P14625 803 aaKnown RBP21.98■■□□□ 1.11
CLN3-263ENST00000637871 KCNA3P22001 575 aa21.98■■□□□ 1.11
CLN3-263ENST00000637871 ZNF622Q969S3 477 aaKnown RBP eCLIP21.98■■□□□ 1.11
CLN3-263ENST00000637871 DBNDD2Q9BQY9 259 aa21.98■■□□□ 1.11
CLN3-263ENST00000637871 ALDH8A1Q9H2A2 487 aaPredicted RBP21.98■■□□□ 1.11
CLN3-263ENST00000637871 SH2B1Q9NRF2 756 aaPredicted RBP21.98■■□□□ 1.11
CLN3-263ENST00000637871 SPEF2Q9C093 1822 aa21.98■■□□□ 1.11
CLN3-263ENST00000637871 H0YIN7 160 aa21.97■■□□□ 1.11
CLN3-263ENST00000637871 KCNJ4P48050 445 aa21.97■■□□□ 1.11
CLN3-263ENST00000637871 KRT32Q14532 448 aa21.97■■□□□ 1.11
CLN3-263ENST00000637871 KBTBD3Q8NAB2 608 aa21.97■■□□□ 1.11
CLN3-263ENST00000637871 TTLL11Q8NHH1 800 aa21.97■■□□□ 1.11
CLN3-263ENST00000637871 RPGRQ92834 1020 aaKnown RBP21.97■■□□□ 1.11
CLN3-263ENST00000637871 GREM2Q9H772 168 aa21.97■■□□□ 1.11
CLN3-263ENST00000637871 SEC31BQ9NQW1 1179 aa21.97■■□□□ 1.11
CLN3-263ENST00000637871 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.97■■□□□ 1.11
CLN3-263ENST00000637871 TGFB2P61812 414 aa21.96■■□□□ 1.11
CLN3-263ENST00000637871 PTH1RQ03431 593 aa21.96■■□□□ 1.11
CLN3-263ENST00000637871 IFIT5Q13325 482 aaKnown RBP21.96■■□□□ 1.11
CLN3-263ENST00000637871 UPF3BQ9BZI7 483 aaKnown RBP21.96■■□□□ 1.11
CLN3-263ENST00000637871 RBM8AQ9Y5S9 174 aaKnown RBP21.96■■□□□ 1.11
CLN3-263ENST00000637871 ANKRD1Q15327 319 aa21.95■■□□□ 1.1
CLN3-263ENST00000637871 RASEFQ8IZ41 740 aa21.95■■□□□ 1.1
CLN3-263ENST00000637871 ZGPATQ8N5A5 531 aaKnown RBP21.95■■□□□ 1.1
CLN3-263ENST00000637871 SF3B3Q15393 1217 aaKnown RBP21.95■■□□□ 1.1
CLN3-263ENST00000637871 CREB3L3Q68CJ9 461 aa21.95■■□□□ 1.1
CLN3-263ENST00000637871 PRPF40BQ6NWY9 871 aaKnown RBP21.95■■□□□ 1.1
CLN3-263ENST00000637871 FAM227BQ96M60 508 aa21.95■■□□□ 1.1
CLN3-263ENST00000637871 HELLSQ9NRZ9 838 aa21.95■■□□□ 1.1
CLN3-263ENST00000637871 U3KPZ7 1027 aaPredicted RBP21.95■■□□□ 1.1
CLN3-263ENST00000637871 ZNF609O15014 1411 aa21.95■■□□□ 1.1
CLN3-263ENST00000637871 UTRNP46939 3433 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 NPR1P16066 1061 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 CCDC152Q4G0S7 254 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 MCMDC2Q4G0Z9 681 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 TAF7LQ5H9L4 462 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 RUFY3Q7L099 469 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 NEUROD6Q96NK8 337 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 SLX4Q8IY92 1834 aa21.94■■□□□ 1.1
CLN3-263ENST00000637871 CASTP20810 708 aaKnown RBP21.93■■□□□ 1.1
CLN3-263ENST00000637871 CCDC158Q5M9N0 1113 aa21.93■■□□□ 1.1
CLN3-263ENST00000637871 MASTLQ96GX5 879 aa21.93■■□□□ 1.1
CLN3-263ENST00000637871 PDRG1Q9NUG6 133 aa21.93■■□□□ 1.1
CLN3-263ENST00000637871 A0A0D9SFI3 127 aa21.92■■□□□ 1.1
CLN3-263ENST00000637871 TAF5LO75529 589 aa21.92■■□□□ 1.1
CLN3-263ENST00000637871 BRD1O95696 1058 aa21.92■■□□□ 1.1
CLN3-263ENST00000637871 CELF1Q92879 486 aaKnown RBP21.92■■□□□ 1.1
CLN3-263ENST00000637871 JAKMIP1Q96N16 626 aaKnown RBP21.92■■□□□ 1.1
CLN3-263ENST00000637871 ZNF219Q9P2Y4 722 aaPredicted RBP21.92■■□□□ 1.1
CLN3-263ENST00000637871 A0A1B0GUL7 405 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 SLC27A2O14975 620 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 ITGA6P23229 1130 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 KLHL40Q2TBA0 621 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 DDX46Q7L014 1031 aaKnown RBP21.91■■□□□ 1.1
CLN3-263ENST00000637871 RBM17Q96I25 401 aaKnown RBP21.91■■□□□ 1.1
CLN3-263ENST00000637871 PAG1Q9NWQ8 432 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 WDR33Q9C0J8 1336 aaKnown RBP21.91■■□□□ 1.1
CLN3-263ENST00000637871 ANKRD18BA2A2Z9 1011 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 IFIT1P09914 478 aaKnown RBP21.91■■□□□ 1.1
CLN3-263ENST00000637871 HOXA10P31260 410 aaPredicted RBP21.91■■□□□ 1.1
CLN3-263ENST00000637871 AK2P54819 239 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 LRRC24Q50LG9 513 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms