RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 ZNF438Q7Z4V0 828 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 ARMC10Q8N2F6 343 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 POP1Q99575 1024 aaKnown RBP7□□□□□ -1.29
SCN1A-211ENST00000635893 SEC31BQ9NQW1 1179 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 SH2B1Q9NRF2 756 aaPredicted RBP7□□□□□ -1.29
SCN1A-211ENST00000635893 TMEM63CQ9P1W3 806 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 SLAIN2Q9P270 581 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 SEPT3Q9UH03 358 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 XKR5Q6UX68 686 aa6.99□□□□□ -1.29
SCN1A-211ENST00000635893 WNT8BQ93098 351 aa6.99□□□□□ -1.29
SCN1A-211ENST00000635893 UTP4Q969X6 686 aaKnown RBP6.99□□□□□ -1.29
SCN1A-211ENST00000635893 CCDC97Q96F63 343 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-211ENST00000635893 FAM46AQ96IP4 442 aaKnown RBP6.99□□□□□ -1.29
SCN1A-211ENST00000635893 CNTN3Q9P232 1028 aa6.99□□□□□ -1.29
SCN1A-211ENST00000635893 COBLO75128 1261 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 PCSK2P16519 638 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 CABP4P57796 275 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 PIP4K2BP78356 416 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 ATCAYQ86WG3 371 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 FOXD4L4Q8WXT5 416 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-211ENST00000635893 KLHDC7BQ96G42 594 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 KANSL3Q9P2N6 904 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 SALL4Q9UJQ4 1053 aa6.98□□□□□ -1.29
SCN1A-211ENST00000635893 H3BRJ5 948 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 DDX3YO15523 660 aaKnown RBP6.97□□□□□ -1.29
SCN1A-211ENST00000635893 ADAM11O75078 769 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 CES1P23141 567 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 HELQQ8TDG4 1101 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 EDEM1Q92611 657 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 MYRFLQ96LU7 910 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 ZMYND15Q9H091 742 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 OSGEPQ9NPF4 335 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 SERPINA10Q9UK55 444 aa6.97□□□□□ -1.29
SCN1A-211ENST00000635893 KIAA1324LA8MWY0 1029 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-211ENST00000635893 TGFB1P01137 390 aa6.96□□□□□ -1.3
SCN1A-211ENST00000635893 NFIAQ12857 509 aa6.96□□□□□ -1.3
SCN1A-211ENST00000635893 NOM1Q5C9Z4 860 aaKnown RBP6.96□□□□□ -1.3
SCN1A-211ENST00000635893 MCTP1Q6DN14 999 aa6.96□□□□□ -1.3
SCN1A-211ENST00000635893 TTC16Q8NEE8 873 aa6.96□□□□□ -1.3
SCN1A-211ENST00000635893 KRTAP4-12Q9BQ66 201 aa6.96□□□□□ -1.3
SCN1A-211ENST00000635893 C7orf69Q9H7B7 122 aa6.96□□□□□ -1.3
SCN1A-211ENST00000635893 NFKBIEO00221 500 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 SART1O43290 800 aaKnown RBP6.95□□□□□ -1.3
SCN1A-211ENST00000635893 MED26O95402 600 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 DNM1Q05193 864 aaKnown RBP6.95□□□□□ -1.3
SCN1A-211ENST00000635893 RNF43Q68DV7 783 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 ANKRD34AQ69YU3 496 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 ZDHHC13Q8IUH4 622 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 TRIM42Q8IWZ5 723 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 C1orf127Q8N9H9 656 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 UBASH3BQ8TF42 649 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 PMEPA1Q969W9 287 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 GGNBP2Q9H3C7 697 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 DZANK1Q9NVP4 752 aa6.95□□□□□ -1.3
SCN1A-211ENST00000635893 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-211ENST00000635893 COL17A1Q9UMD9 1497 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-211ENST00000635893 HMX2A2RU54 273 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 PDE2AO00408 941 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-211ENST00000635893 PDGFAP04085 211 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 MZF1P28698 734 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-211ENST00000635893 GRIK1P39086 918 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 C8orf34Q49A92 452 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 INTS5Q6P9B9 1019 aaKnown RBP6.94□□□□□ -1.3
SCN1A-211ENST00000635893 KRTAP1-3Q8IUG1 177 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 CLEC10AQ8IUN9 316 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 FAM20CQ8IXL6 584 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 FAM83CQ9BQN1 747 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 DBNDD2Q9BQY9 259 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 RNF208Q9H0X6 261 aa6.94□□□□□ -1.3
SCN1A-211ENST00000635893 ACPPP15309 386 aa6.93□□□□□ -1.3
SCN1A-211ENST00000635893 ARL4DP49703 201 aa6.93□□□□□ -1.3
SCN1A-211ENST00000635893 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-211ENST00000635893 SOX13Q9UN79 622 aa6.93□□□□□ -1.3
SCN1A-211ENST00000635893 BMP3P12645 472 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 EIF1AXP47813 144 aaKnown RBP6.92□□□□□ -1.3
SCN1A-211ENST00000635893 PREPP48147 710 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 NLRP12P59046 1061 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 ALKBH2Q6NS38 261 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 TMEM102Q8N9M5 508 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-211ENST00000635893 SLC7A3Q8WY07 619 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 RUSC1Q9BVN2 902 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 CHRDQ9H2X0 955 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 HIF3AQ9Y2N7 669 aa6.92□□□□□ -1.3
SCN1A-211ENST00000635893 A6NHS1 94 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 TRPA1O75762 1119 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 MPSTP25325 297 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 IRAK1P51617 712 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 C19orf57Q0VDD7 668 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 LCE3BQ5TA77 95 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 FDX2Q6P4F2 183 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 GTF3C2Q8WUA4 911 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-211ENST00000635893 HHIPQ96QV1 700 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 KCNF1Q9H3M0 494 aa6.91□□□□□ -1.3
SCN1A-211ENST00000635893 MEGF11A6BM72 1044 aa6.9□□□□□ -1.3
SCN1A-211ENST00000635893 PRR19A6NJB7 356 aa6.9□□□□□ -1.3
SCN1A-211ENST00000635893 GP2P55259 537 aaKnown RBP6.9□□□□□ -1.3
SCN1A-211ENST00000635893 BEND4Q6ZU67 534 aa6.9□□□□□ -1.3
SCN1A-211ENST00000635893 BSNDQ8WZ55 320 aa6.9□□□□□ -1.3
SCN1A-211ENST00000635893 NXPE3Q969Y0 559 aa6.9□□□□□ -1.3
SCN1A-211ENST00000635893 OSMRQ99650 979 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms