RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 VEZTQ9HBM0 779 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 NLRP2Q9NX02 1062 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 CLIP2Q9UDT6 1046 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 SDSP20132 328 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 PAX7P23759 505 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 TTC22Q5TAA0 569 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 CC2D1AQ6P1N0 951 aaPredicted RBP11.85□□□□□ -0.51
VPS39-214ENST00000614932 ARHGEF25Q86VW2 580 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 CCAR2Q8N163 923 aaKnown RBP11.85□□□□□ -0.51
VPS39-214ENST00000614932 IL1RAPL2Q9NP60 686 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 KCND1Q9NSA2 647 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 WDR33Q9C0J8 1336 aaKnown RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 PLEKHO1Q53GL0 409 aaPredicted RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 C1orf141Q5JVX7 400 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 CCDC158Q5M9N0 1113 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 KAT2BQ92831 832 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 CAND2O75155 1236 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 GCFC2P16383 781 aaKnown RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 PIP4K2AP48426 406 aaPredicted RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 EIF4A1P60842 406 aaKnown RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 AIMP1Q12904 312 aaKnown RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 SLC39A6Q13433 755 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 CUL4AQ13619 759 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 INTS4Q96HW7 963 aaKnown RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 IRAK4Q9NWZ3 460 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 TRMT1Q9NXH9 659 aaKnown RBP11.84□□□□□ -0.51
VPS39-214ENST00000614932 LTN1O94822 1766 aa11.84□□□□□ -0.51
VPS39-214ENST00000614932 TCHHQ07283 1943 aa11.83□□□□□ -0.51
VPS39-214ENST00000614932 PI4KAP2A4QPH2 592 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 CSB-PGBD3P0DP91 1061 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 SKILP12757 684 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 ATF3P18847 181 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 TBC1D8BQ0IIM8 1120 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 MTA1Q13330 715 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 CCDC144BQ3MJ40 725 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 KCNV1Q6PIU1 500 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 CCDC144CPQ8IYA2 1237 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 PI4KAP1Q8N8J0 262 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 ERCC4Q92889 916 aaPredicted RBP11.83□□□□□ -0.52
VPS39-214ENST00000614932 RGPD2P0DJD1 1756 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 COQ9O75208 318 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 MAP4K4O95819 1239 aaPredicted RBP11.83□□□□□ -0.52
VPS39-214ENST00000614932 MCM2P49736 904 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 PROSER3Q2NL68 480 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 LUZP1Q86V48 1076 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 JPH2Q9BR39 696 aaPredicted RBP11.83□□□□□ -0.52
VPS39-214ENST00000614932 TRIM6Q9C030 488 aaPredicted RBP11.83□□□□□ -0.52
VPS39-214ENST00000614932 USP44Q9H0E7 712 aa11.83□□□□□ -0.52
VPS39-214ENST00000614932 H3BQF6 201 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 NBPF7P0C2Y1 421 aaPredicted RBP11.82□□□□□ -0.52
VPS39-214ENST00000614932 CDC25BP30305 580 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 SNW1Q13573 536 aaKnown RBP11.82□□□□□ -0.52
VPS39-214ENST00000614932 CPLX2Q6PUV4 134 aaKnown RBP11.82□□□□□ -0.52
VPS39-214ENST00000614932 CTCFLQ8NI51 663 aaPredicted RBP11.82□□□□□ -0.52
VPS39-214ENST00000614932 SH3GL3Q99963 347 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 HMMRO75330 724 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 UBTFL1P0CB47 393 aaPredicted RBP11.82□□□□□ -0.52
VPS39-214ENST00000614932 LRRC31Q6UY01 552 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 TEX13AQ9BXU3 409 aaPredicted RBP11.82□□□□□ -0.52
VPS39-214ENST00000614932 C19orf44Q9H6X5 657 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 ARFGAP3Q9NP61 516 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 VPS18Q9P253 973 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 MCM8Q9UJA3 840 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 PXDNQ92626 1479 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 MAFGO15525 162 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 PPFIA4O75335 1185 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 SCRN1Q12765 414 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 N4BP2L2Q92802 583 aaPredicted RBP11.82□□□□□ -0.52
VPS39-214ENST00000614932 RILPL2Q969X0 211 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 FUT8Q9BYC5 575 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 CNPY2Q9Y2B0 182 aa11.82□□□□□ -0.52
VPS39-214ENST00000614932 RPAP1Q9BWH6 1393 aaPredicted RBP11.81□□□□□ -0.52
VPS39-214ENST00000614932 RNMTO43148 476 aaKnown RBP11.81□□□□□ -0.52
VPS39-214ENST00000614932 GRIK3Q13003 919 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 CRYMQ14894 314 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 AKAP4Q5JQC9 854 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 ANKRD23Q86SG2 305 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 NUTM1Q86Y26 1132 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 CPSF2Q9P2I0 782 aaKnown RBP11.81□□□□□ -0.52
VPS39-214ENST00000614932 NFAT5O94916 1531 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 ANKRD18BA2A2Z9 1011 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 TUBB4AP04350 444 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 GPTP24298 496 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 CCDC26Q8TAB7 109 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 DDX11Q96FC9 970 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 TMEM94Q12767 1356 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 KIF24Q5T7B8 1368 aa11.81□□□□□ -0.52
VPS39-214ENST00000614932 EFCAB8A8MWE9 144 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 NF2P35240 595 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 TRAF1Q13077 416 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 ZNF483Q8TF39 744 aaPredicted RBP11.8□□□□□ -0.52
VPS39-214ENST00000614932 TADA3O75528 432 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 PDE1AP54750 535 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 RWDD2BP57060 319 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 SRCIN1Q9C0H9 1055 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 CBX8Q9HC52 389 aa11.8□□□□□ -0.52
VPS39-214ENST00000614932 SURF6O75683 361 aaKnown RBP11.79□□□□□ -0.52
VPS39-214ENST00000614932 GNAI3P08754 354 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 MYL6BP14649 208 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 CWF19L2Q2TBE0 894 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms