RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 PRIMPOLQ96LW4 560 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 UBR2Q8IWV8 1755 aa23.79■■□□□ 1.4
SHKBP1-225ENST00000600733 ZNF165P49910 485 aa23.79■■□□□ 1.4
SHKBP1-225ENST00000600733 NAA16Q6N069 864 aaPredicted RBP23.79■■□□□ 1.4
SHKBP1-225ENST00000600733 CADPS2Q86UW7 1296 aa23.79■■□□□ 1.4
SHKBP1-225ENST00000600733 TSC1Q92574 1164 aa23.79■■□□□ 1.4
SHKBP1-225ENST00000600733 MYH15Q9Y2K3 1946 aa23.79■■□□□ 1.4
SHKBP1-225ENST00000600733 KCPQ6ZWJ8 1503 aa23.79■■□□□ 1.4
SHKBP1-225ENST00000600733 GUCY1B3Q02153 619 aa23.78■■□□□ 1.4
SHKBP1-225ENST00000600733 FKBP4Q02790 459 aaKnown RBP eCLIP23.78■■□□□ 1.4
SHKBP1-225ENST00000600733 HMGN5P82970 282 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 OSBP2Q969R2 916 aa23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 ERVV-2B6SEH9 535 aa23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 PDIA3P30101 505 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 TDRD7Q8NHU6 1098 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 MAP7D2Q96T17 732 aa23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 TRIM5Q9C035 493 aa23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 PRDM11Q9NQV5 511 aa23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 WDR17Q8IZU2 1322 aa23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 SALL1Q9NSC2 1324 aa23.77■■□□□ 1.4
SHKBP1-225ENST00000600733 CIAO1O76071 339 aa23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 USP28Q96RU2 1077 aa23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 NRBP1Q9UHY1 535 aa23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 CCDC186Q7Z3E2 898 aa23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 DRC7Q8IY82 874 aa23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 CCDC85AQ96PX6 553 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 GOLPH3LQ9H4A5 285 aa23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 RCOR1Q9UKL0 485 aa23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 ZNF330Q9Y3S2 320 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-225ENST00000600733 ADORA1P30542 326 aa23.75■■□□□ 1.39
SHKBP1-225ENST00000600733 ZNF75DP51815 510 aa23.75■■□□□ 1.39
SHKBP1-225ENST00000600733 PLA2G4DQ86XP0 818 aa23.75■■□□□ 1.39
SHKBP1-225ENST00000600733 CCAR1Q8IX12 1150 aaKnown RBP23.75■■□□□ 1.39
SHKBP1-225ENST00000600733 VSIG10Q8N0Z9 540 aa23.75■■□□□ 1.39
SHKBP1-225ENST00000600733 GPHNQ9NQX3 736 aaPredicted RBP23.75■■□□□ 1.39
SHKBP1-225ENST00000600733 CEP126Q9P2H0 1117 aa23.75■■□□□ 1.39
SHKBP1-225ENST00000600733 LRMPQ12912 555 aa23.74■■□□□ 1.39
SHKBP1-225ENST00000600733 ARID3AQ99856 593 aa23.74■■□□□ 1.39
SHKBP1-225ENST00000600733 ATG3Q9NT62 314 aa23.74■■□□□ 1.39
SHKBP1-225ENST00000600733 KIF3AQ9Y496 699 aa23.74■■□□□ 1.39
SHKBP1-225ENST00000600733 HAND2P61296 217 aa23.73■■□□□ 1.39
SHKBP1-225ENST00000600733 ILDR1Q86SU0 546 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-225ENST00000600733 FOXP2O15409 715 aa23.73■■□□□ 1.39
SHKBP1-225ENST00000600733 CCDC57Q2TAC2 916 aa23.73■■□□□ 1.39
SHKBP1-225ENST00000600733 TICAM2Q86XR7 235 aa23.73■■□□□ 1.39
SHKBP1-225ENST00000600733 ZNF274Q96GC6 653 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-225ENST00000600733 FAM177BA6PVY3 158 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 HSP90AB3PQ58FF7 597 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 GORABQ5T7V8 394 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 C11orf57Q6ZUT1 292 aaPredicted RBP23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 CARMIL3Q8ND23 1372 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 XAGE2Q96GT9 111 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 SPEF2Q9C093 1822 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 GTF2F1P35269 517 aaKnown RBP eCLIP23.72■■□□□ 1.391e-6■■■■■ 54.6
SHKBP1-225ENST00000600733 SNW1Q13573 536 aaKnown RBP23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 SCARF1Q14162 830 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 WASHC4Q2M389 1173 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 TTC39AQ5SRH9 613 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 ISCA1Q9BUE6 129 aa23.72■■□□□ 1.39
SHKBP1-225ENST00000600733 FDPSP14324 419 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-225ENST00000600733 CCDC158Q5M9N0 1113 aa23.71■■□□□ 1.39
SHKBP1-225ENST00000600733 NWD2Q9ULI1 1742 aa23.71■■□□□ 1.39
SHKBP1-225ENST00000600733 PAPPAQ13219 1627 aa23.71■■□□□ 1.39
SHKBP1-225ENST00000600733 A0A087WWV3 80 aa23.71■■□□□ 1.39
SHKBP1-225ENST00000600733 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.71■■□□□ 1.39
SHKBP1-225ENST00000600733 IQCB1Q15051 598 aa23.7■■□□□ 1.38
SHKBP1-225ENST00000600733 NKX1-1Q15270 411 aaPredicted RBP23.7■■□□□ 1.38
SHKBP1-225ENST00000600733 FAM89AQ96GI7 184 aa23.7■■□□□ 1.38
SHKBP1-225ENST00000600733 ZNF396Q96N95 335 aaPredicted RBP23.7■■□□□ 1.38
SHKBP1-225ENST00000600733 ME1P48163 572 aa23.7■■□□□ 1.38
SHKBP1-225ENST00000600733 PI16Q6UXB8 463 aa23.7■■□□□ 1.38
SHKBP1-225ENST00000600733 CCDC73Q6ZRK6 1079 aa23.7■■□□□ 1.38
SHKBP1-225ENST00000600733 IL2RBP14784 551 aa23.69■■□□□ 1.38
SHKBP1-225ENST00000600733 TCIRG1Q13488 830 aa23.69■■□□□ 1.38
SHKBP1-225ENST00000600733 MTERF4Q7Z6M4 381 aaKnown RBP23.69■■□□□ 1.38
SHKBP1-225ENST00000600733 COL5A2P05997 1499 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 FGAP02671 866 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 OTUD7BQ6GQQ9 843 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 ZSCAN25Q6NSZ9 544 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 BRINP3Q76B58 766 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 ZNF710Q8N1W2 664 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 CLIP2Q9UDT6 1046 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 TNS2Q63HR2 1409 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 CAVIN2O95810 425 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 ZAP70P43403 619 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 ENGASEQ8NFI3 743 aa23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 PUS7LQ9H0K6 701 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-225ENST00000600733 CTAGE5O15320 804 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 KINO60870 393 aaKnown RBP23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 FSIP1Q8NA03 581 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 ERCC4Q92889 916 aaPredicted RBP23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 AKAP2Q9Y2D5 859 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 GOLGA6L19H0YKK7 550 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 EVCP57679 992 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 FAM160A1Q05DH4 1040 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 STX1AQ16623 288 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 IMMTQ16891 758 aaKnown RBP23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 CCDC144BQ3MJ40 725 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms