RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 K7ELQ4 463 aaPredicted RBP11.54□□□□□ -0.56
LIG3-216ENST00000593099 TMEM67Q5HYA8 995 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 CC2D2BQ6DHV5 1058 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 TEX11Q8IYF3 940 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 ARHGEF1Q92888 912 aaKnown RBP11.54□□□□□ -0.56
LIG3-216ENST00000593099 KRT23Q9C075 422 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 GREM2Q9H772 168 aa11.54□□□□□ -0.56
LIG3-216ENST00000593099 RNF123Q5XPI4 1314 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 H7C1D1 291 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 KIF5BP33176 963 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 SKOR2Q2VWA4 1001 aaPredicted RBP11.53□□□□□ -0.56
LIG3-216ENST00000593099 LARP1BQ659C4 914 aaKnown RBP11.53□□□□□ -0.56
LIG3-216ENST00000593099 CERS3Q8IU89 383 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 COL15A1P39059 1388 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 PPEF1O14829 653 aaPredicted RBP11.53□□□□□ -0.56
LIG3-216ENST00000593099 ZBTB7AO95365 584 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 TXLNAP40222 546 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 BRPF1P55201 1214 aaPredicted RBP11.53□□□□□ -0.56
LIG3-216ENST00000593099 SSH3Q8TE77 659 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 CNNM2Q9H8M5 875 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 TSPY3P0CV98 308 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 TSPY8P0CW00 308 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 ZNF76P36508 570 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 JMYQ8N9B5 988 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 CDK5RAP3Q96JB5 506 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 CD163L1Q9NR16 1453 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 STK38Q15208 465 aa11.53□□□□□ -0.56
LIG3-216ENST00000593099 UBR1Q8IWV7 1749 aa11.52□□□□□ -0.56
LIG3-216ENST00000593099 NPR1P16066 1061 aa11.52□□□□□ -0.56
LIG3-216ENST00000593099 NMIQ13287 307 aaPredicted RBP11.52□□□□□ -0.56
LIG3-216ENST00000593099 RC3H1Q5TC82 1133 aaKnown RBP11.52□□□□□ -0.56
LIG3-216ENST00000593099 NEK1Q96PY6 1258 aa11.52□□□□□ -0.56
LIG3-216ENST00000593099 GOLGA8AA7E2F4 631 aa11.52□□□□□ -0.57
LIG3-216ENST00000593099 GOLGA8BA8MQT2 603 aa11.52□□□□□ -0.57
LIG3-216ENST00000593099 GTF2IP78347 998 aa11.52□□□□□ -0.57
LIG3-216ENST00000593099 XDHP47989 1333 aa11.52□□□□□ -0.57
LIG3-216ENST00000593099 CHRNDQ07001 517 aa11.52□□□□□ -0.57
LIG3-216ENST00000593099 DALRD3Q5D0E6 543 aaKnown RBP11.52□□□□□ -0.57
LIG3-216ENST00000593099 LEMD3Q9Y2U8 911 aa11.52□□□□□ -0.57
LIG3-216ENST00000593099 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.51□□□□□ -0.57
LIG3-216ENST00000593099 MCM5P33992 734 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 UBE4AQ14139 1066 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 SUSD4Q5VX71 490 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 PES1O00541 588 aaKnown RBP11.51□□□□□ -0.57
LIG3-216ENST00000593099 DLGAP5Q15398 846 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 PLEKHM2Q8IWE5 1019 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 TTLL6Q8N841 843 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 SH2B1Q9NRF2 756 aaPredicted RBP11.51□□□□□ -0.57
LIG3-216ENST00000593099 MBD4O95243 580 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 CCDC93Q567U6 631 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 HOOK2Q96ED9 719 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 ESYT1Q9BSJ8 1104 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 COPRSQ9NQ92 184 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 BECN2A8MW95 431 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 GRM1Q13255 1194 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 HLFQ16534 295 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 TMTC2Q8N394 836 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 SPATA5Q8NB90 893 aa11.51□□□□□ -0.57
LIG3-216ENST00000593099 NKX1-1Q15270 411 aaPredicted RBP11.5□□□□□ -0.57
LIG3-216ENST00000593099 SPON1Q9HCB6 807 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 RBM8AQ9Y5S9 174 aaKnown RBP11.5□□□□□ -0.57
LIG3-216ENST00000593099 ZNF804BA4D1E1 1349 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 TPM2P07951 284 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 MFSD14BQ5SR56 506 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 CUL5Q93034 780 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 DDX11Q96FC9 970 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 MASTLQ96GX5 879 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 WDR33Q9C0J8 1336 aaKnown RBP11.5□□□□□ -0.57
LIG3-216ENST00000593099 CCDC82Q8N4S0 544 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 WTAPQ15007 396 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 PIM2Q9P1W9 311 aa11.5□□□□□ -0.57
LIG3-216ENST00000593099 RAD50Q92878 1312 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 TRAF1Q13077 416 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 HELLSQ9NRZ9 838 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 PSDA5PKW4 1024 aaPredicted RBP11.49□□□□□ -0.57
LIG3-216ENST00000593099 PDE8BO95263 885 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 DOK7Q18PE1 504 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 FNBP4Q8N3X1 1017 aaPredicted RBP11.49□□□□□ -0.57
LIG3-216ENST00000593099 APPBP2Q92624 585 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 GOLGA6L19H0YKK7 550 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 GYG1P46976 350 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 LRRC24Q50LG9 513 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 TTLL5Q6EMB2 1281 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 CCDC125Q86Z20 511 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 SDF4Q9BRK5 362 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 SEC31BQ9NQW1 1179 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 TTF2Q9UNY4 1162 aaKnown RBP11.49□□□□□ -0.57
LIG3-216ENST00000593099 LIMCH1Q9UPQ0 1083 aa11.49□□□□□ -0.57
LIG3-216ENST00000593099 USP32Q8NFA0 1604 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 HMGN5P82970 282 aaKnown RBP11.48□□□□□ -0.57
LIG3-216ENST00000593099 GRAPQ13588 217 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 TNIP1Q15025 636 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 R3HDM1Q15032 1099 aaKnown RBP11.48□□□□□ -0.57
LIG3-216ENST00000593099 CCDC83Q8IWF9 413 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 GRAPLQ8TC17 118 aaPredicted RBP11.48□□□□□ -0.57
LIG3-216ENST00000593099 AOX1Q06278 1338 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 CARMIL3Q8ND23 1372 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 CIAO1O76071 339 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 KIAA2012Q0VF49 1180 aa11.48□□□□□ -0.57
LIG3-216ENST00000593099 KBTBD3Q8NAB2 608 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms