RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 SSTR4P31391 388 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 CABP4P57796 275 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 UVSSAQ2YD98 709 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 ADAMTSL4Q6UY14 1074 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 ATCAYQ86WG3 371 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 TTC16Q8NEE8 873 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 EDEM1Q92611 657 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 UTP4Q969X6 686 aaKnown RBP6.93□□□□□ -1.3
VPS4B-203ENST00000588323 KANSL3Q9P2N6 904 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.92□□□□□ -1.3
VPS4B-203ENST00000588323 POP1Q99575 1024 aaKnown RBP6.92□□□□□ -1.3
VPS4B-203ENST00000588323 ADAM19Q9H013 955 aa6.92□□□□□ -1.3
VPS4B-203ENST00000588323 SEC31BQ9NQW1 1179 aa6.92□□□□□ -1.3
VPS4B-203ENST00000588323 CNTN3Q9P232 1028 aa6.92□□□□□ -1.3
VPS4B-203ENST00000588323 H3BRJ5 948 aa6.91□□□□□ -1.3
VPS4B-203ENST00000588323 TM4SF5O14894 197 aa6.91□□□□□ -1.3
VPS4B-203ENST00000588323 CES1P23141 567 aa6.91□□□□□ -1.3
VPS4B-203ENST00000588323 DNM1Q05193 864 aaKnown RBP6.91□□□□□ -1.3
VPS4B-203ENST00000588323 KIAA1211Q6ZU35 1233 aa6.91□□□□□ -1.3
VPS4B-203ENST00000588323 ARMC10Q8N2F6 343 aa6.91□□□□□ -1.3
VPS4B-203ENST00000588323 HELQQ8TDG4 1101 aa6.91□□□□□ -1.3
VPS4B-203ENST00000588323 SALL4Q9UJQ4 1053 aa6.91□□□□□ -1.3
VPS4B-203ENST00000588323 KRTAP9-6A0A140TA67 174 aa6.9□□□□□ -1.3
VPS4B-203ENST00000588323 NOM1Q5C9Z4 860 aaKnown RBP6.9□□□□□ -1.3
VPS4B-203ENST00000588323 C1orf127Q8N9H9 656 aa6.9□□□□□ -1.3
VPS4B-203ENST00000588323 UBASH3BQ8TF42 649 aa6.9□□□□□ -1.3
VPS4B-203ENST00000588323 FOXD4L4Q8WXT5 416 aaPredicted RBP6.9□□□□□ -1.3
VPS4B-203ENST00000588323 KLHDC7BQ96G42 594 aa6.9□□□□□ -1.3
VPS4B-203ENST00000588323 FAM46AQ96IP4 442 aaKnown RBP6.9□□□□□ -1.3
VPS4B-203ENST00000588323 PDE2AO00408 941 aaPredicted RBP6.89□□□□□ -1.31
VPS4B-203ENST00000588323 DDX3YO15523 660 aaKnown RBP6.89□□□□□ -1.31
VPS4B-203ENST00000588323 SART1O43290 800 aaKnown RBP6.89□□□□□ -1.31
VPS4B-203ENST00000588323 ADAM11O75078 769 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 COBLO75128 1261 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 PDGFAP04085 211 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 CD97P48960 835 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 PIP4K2BP78356 416 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 C8orf34Q49A92 452 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 XKR5Q6UX68 686 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 WNT8BQ93098 351 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 OSGEPQ9NPF4 335 aa6.89□□□□□ -1.31
VPS4B-203ENST00000588323 ACPPP15309 386 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 MZF1P28698 734 aaPredicted RBP6.88□□□□□ -1.31
VPS4B-203ENST00000588323 NFIAQ12857 509 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 ANKRD34AQ69YU3 496 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 SLC7A3Q8WY07 619 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 PMEPA1Q969W9 287 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 MYRFLQ96LU7 910 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 GGNBP2Q9H3C7 697 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 C7orf69Q9H7B7 122 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 DZANK1Q9NVP4 752 aa6.88□□□□□ -1.31
VPS4B-203ENST00000588323 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.88□□□□□ -1.31
VPS4B-203ENST00000588323 A6NHS1 94 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 TGFB1P01137 390 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 MPSTP25325 297 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 ARL4DP49703 201 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 NLRP12P59046 1061 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 ALKBH2Q6NS38 261 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 TRIM42Q8IWZ5 723 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 FAM20CQ8IXL6 584 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 GTF3C2Q8WUA4 911 aaPredicted RBP6.87□□□□□ -1.31
VPS4B-203ENST00000588323 DBNDD2Q9BQY9 259 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 RNF208Q9H0X6 261 aa6.87□□□□□ -1.31
VPS4B-203ENST00000588323 HMX2A2RU54 273 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 ARID3CA6NKF2 412 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 NFKBIEO00221 500 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 GRIK1P39086 918 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 EIF1AXP47813 144 aaKnown RBP6.86□□□□□ -1.31
VPS4B-203ENST00000588323 AAMPQ13685 434 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 RNF43Q68DV7 783 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 MCTP1Q6DN14 999 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 ZDHHC13Q8IUH4 622 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 CLEC10AQ8IUN9 316 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 HHIPQ96QV1 700 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 RUSC1Q9BVN2 902 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 KCNF1Q9H3M0 494 aa6.86□□□□□ -1.31
VPS4B-203ENST00000588323 TRPA1O75762 1119 aa6.85□□□□□ -1.31
VPS4B-203ENST00000588323 MED26O95402 600 aa6.85□□□□□ -1.31
VPS4B-203ENST00000588323 FDX2Q6P4F2 183 aa6.85□□□□□ -1.31
VPS4B-203ENST00000588323 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.85□□□□□ -1.31
VPS4B-203ENST00000588323 TMEM102Q8N9M5 508 aaPredicted RBP6.85□□□□□ -1.31
VPS4B-203ENST00000588323 OSMRQ99650 979 aa6.85□□□□□ -1.31
VPS4B-203ENST00000588323 CHRDQ9H2X0 955 aa6.85□□□□□ -1.31
VPS4B-203ENST00000588323 SOX13Q9UN79 622 aa6.85□□□□□ -1.31
VPS4B-203ENST00000588323 POLIQ9UNA4 740 aa6.85□□□□□ -1.31
VPS4B-203ENST00000588323 KIAA1324LA8MWY0 1029 aaPredicted RBP6.84□□□□□ -1.31
VPS4B-203ENST00000588323 BMP3P12645 472 aa6.84□□□□□ -1.31
VPS4B-203ENST00000588323 PREPP48147 710 aa6.84□□□□□ -1.31
VPS4B-203ENST00000588323 C19orf57Q0VDD7 668 aa6.84□□□□□ -1.31
VPS4B-203ENST00000588323 INTS5Q6P9B9 1019 aaKnown RBP6.84□□□□□ -1.31
VPS4B-203ENST00000588323 BEND4Q6ZU67 534 aa6.84□□□□□ -1.31
VPS4B-203ENST00000588323 FAM83CQ9BQN1 747 aa6.84□□□□□ -1.31
VPS4B-203ENST00000588323 GAS2O43903 313 aaKnown RBP6.83□□□□□ -1.32
VPS4B-203ENST00000588323 PHACTR2O75167 634 aa6.83□□□□□ -1.32
VPS4B-203ENST00000588323 EDN3P14138 238 aa6.83□□□□□ -1.32
VPS4B-203ENST00000588323 MTMR3Q13615 1198 aa6.83□□□□□ -1.32
VPS4B-203ENST00000588323 BSNDQ8WZ55 320 aa6.83□□□□□ -1.32
VPS4B-203ENST00000588323 ZKSCAN3Q9BRR0 538 aa6.83□□□□□ -1.32
VPS4B-203ENST00000588323 HIF3AQ9Y2N7 669 aa6.83□□□□□ -1.32
VPS4B-203ENST00000588323 EREGO14944 169 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms