RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CASZ1Q86V15 1759 aa16.96■□□□□ 0.31
LIG3-205ENST00000585941 CYP2E1P05181 493 aaPredicted RBP16.96■□□□□ 0.31
LIG3-205ENST00000585941 AK2P54819 239 aa16.96■□□□□ 0.31
LIG3-205ENST00000585941 TBC1D9BQ66K14 1250 aa16.96■□□□□ 0.31
LIG3-205ENST00000585941 BLOC1S2Q6QNY1 142 aa16.96■□□□□ 0.31
LIG3-205ENST00000585941 SEC31BQ9NQW1 1179 aa16.96■□□□□ 0.31
LIG3-205ENST00000585941 GOLGA6L22H0YM25 854 aa16.95■□□□□ 0.3
LIG3-205ENST00000585941 C4AP0C0L4 1744 aa16.95■□□□□ 0.3
LIG3-205ENST00000585941 ZAP70P43403 619 aa16.95■□□□□ 0.3
LIG3-205ENST00000585941 ADCK5Q3MIX3 580 aa16.95■□□□□ 0.3
LIG3-205ENST00000585941 SLC27A3Q5K4L6 730 aa16.95■□□□□ 0.3
LIG3-205ENST00000585941 CCDC102BQ68D86 513 aa16.95■□□□□ 0.3
LIG3-205ENST00000585941 TPTE2Q6XPS3 522 aa16.95■□□□□ 0.3
LIG3-205ENST00000585941 ZGPATQ8N5A5 531 aaKnown RBP16.95■□□□□ 0.3
LIG3-205ENST00000585941 RFC4P35249 363 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 MCAMP43121 646 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 TRAPPC3LQ5T215 181 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 ANKRD18AQ8IVF6 992 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 APPBP2Q92624 585 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 ARHGEF1Q92888 912 aaKnown RBP16.94■□□□□ 0.3
LIG3-205ENST00000585941 SEC62Q99442 399 aaKnown RBP16.94■□□□□ 0.3
LIG3-205ENST00000585941 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.94■□□□□ 0.3
LIG3-205ENST00000585941 BRWD3Q6RI45 1802 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 HMGB1P09429 215 aaKnown RBP16.94■□□□□ 0.3
LIG3-205ENST00000585941 SCARF1Q14162 830 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 CCDC129Q6ZRS4 1044 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 KRT27Q7Z3Y8 459 aa16.94■□□□□ 0.3
LIG3-205ENST00000585941 NBPF5PQ86XG9 351 aaPredicted RBP16.94■□□□□ 0.3
LIG3-205ENST00000585941 MAST3O60307 1309 aa16.93■□□□□ 0.3
LIG3-205ENST00000585941 RPS6KB1P23443 525 aa16.93■□□□□ 0.3
LIG3-205ENST00000585941 NOL8Q76FK4 1167 aaKnown RBP16.93■□□□□ 0.3
LIG3-205ENST00000585941 NLRP3Q96P20 1036 aa16.93■□□□□ 0.3
LIG3-205ENST00000585941 BSDC1Q9NW68 430 aaPredicted RBP16.93■□□□□ 0.3
LIG3-205ENST00000585941 CTNNA3Q9UI47 895 aa16.93■□□□□ 0.3
LIG3-205ENST00000585941 PHKA1P46020 1223 aa16.92■□□□□ 0.3
LIG3-205ENST00000585941 GSE1Q14687 1217 aa16.92■□□□□ 0.3
LIG3-205ENST00000585941 WASHC4Q2M389 1173 aa16.92■□□□□ 0.3
LIG3-205ENST00000585941 BICDL1Q6ZP65 573 aa16.92■□□□□ 0.3
LIG3-205ENST00000585941 HELBQ8NG08 1087 aaPredicted RBP16.92■□□□□ 0.3
LIG3-205ENST00000585941 SRP68Q9UHB9 627 aaKnown RBP16.92■□□□□ 0.3
LIG3-205ENST00000585941 A0A1B0GUL6 1792 aa16.92■□□□□ 0.3
LIG3-205ENST00000585941 HSPD1P10809 573 aaKnown RBP16.91■□□□□ 0.3
LIG3-205ENST00000585941 CHRNDQ07001 517 aa16.91■□□□□ 0.3
LIG3-205ENST00000585941 UBE3CQ15386 1083 aa16.91■□□□□ 0.3
LIG3-205ENST00000585941 SKOR2Q2VWA4 1001 aaPredicted RBP16.91■□□□□ 0.3
LIG3-205ENST00000585941 NEK1Q96PY6 1258 aa16.91■□□□□ 0.3
LIG3-205ENST00000585941 UBR3Q6ZT12 1888 aa16.91■□□□□ 0.3
LIG3-205ENST00000585941 PDIA4P13667 645 aaKnown RBP16.91■□□□□ 0.3
LIG3-205ENST00000585941 DEKP35659 375 aaKnown RBP16.91■□□□□ 0.3
LIG3-205ENST00000585941 UBE4AQ14139 1066 aa16.91■□□□□ 0.3
LIG3-205ENST00000585941 ZNF772Q68DY9 489 aaPredicted RBP16.91■□□□□ 0.3
LIG3-205ENST00000585941 OSBP2Q969R2 916 aa16.91■□□□□ 0.3
LIG3-205ENST00000585941 DOCK2Q92608 1830 aa16.91■□□□□ 0.3
LIG3-205ENST00000585941 CARMIL3Q8ND23 1372 aa16.9■□□□□ 0.3
LIG3-205ENST00000585941 CHGBP05060 677 aa16.9■□□□□ 0.3
LIG3-205ENST00000585941 CYP21A2P08686 494 aa16.9■□□□□ 0.3
LIG3-205ENST00000585941 ADD2P35612 726 aa16.9■□□□□ 0.3
LIG3-205ENST00000585941 SPATA5Q8NB90 893 aa16.9■□□□□ 0.3
LIG3-205ENST00000585941 M0R2C6 588 aa16.89■□□□□ 0.29
LIG3-205ENST00000585941 BAG4O95429 457 aaKnown RBP16.89■□□□□ 0.29
LIG3-205ENST00000585941 CPA1P15085 419 aa16.89■□□□□ 0.29
LIG3-205ENST00000585941 TRAK2O60296 914 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 RBM6P78332 1123 aaKnown RBP16.88■□□□□ 0.29
LIG3-205ENST00000585941 PI16Q6UXB8 463 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 LRRC4BQ9NT99 713 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 GNL3LQ9NVN8 582 aaKnown RBP16.88■□□□□ 0.29
LIG3-205ENST00000585941 WDR33Q9C0J8 1336 aaKnown RBP16.88■□□□□ 0.29
LIG3-205ENST00000585941 BRD1O95696 1058 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 MAP3K12Q12852 859 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 SLC9C2Q5TAH2 1124 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 ANKRD2Q9GZV1 360 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 SMC3Q9UQE7 1217 aa16.88■□□□□ 0.29
LIG3-205ENST00000585941 MYO5AQ9Y4I1 1855 aaKnown RBP16.87■□□□□ 0.29
LIG3-205ENST00000585941 LAMA4Q16363 1823 aa16.87■□□□□ 0.29
LIG3-205ENST00000585941 IDH1O75874 414 aaKnown RBP16.87■□□□□ 0.29
LIG3-205ENST00000585941 RPS8P62241 208 aaKnown RBP16.87■□□□□ 0.29
LIG3-205ENST00000585941 C3orf67Q6ZVT6 689 aa16.87■□□□□ 0.29
LIG3-205ENST00000585941 PIH1D3Q9NQM4 214 aaKnown RBP16.87■□□□□ 0.29
LIG3-205ENST00000585941 NPHP1O15259 732 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 GPAA1O43292 621 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 PHF14O94880 888 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 RASGRF1Q13972 1273 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 IMMTQ16891 758 aaKnown RBP16.86■□□□□ 0.29
LIG3-205ENST00000585941 SLFNL1Q499Z3 407 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 SMIM5Q71RC9 77 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 MINPP1Q9UNW1 487 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 ZDHHC9Q9Y397 364 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 TAF6LQ9Y6J9 622 aa16.86■□□□□ 0.29
LIG3-205ENST00000585941 ZNF804BA4D1E1 1349 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 TAF1P21675 1872 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.85■□□□□ 0.29
LIG3-205ENST00000585941 PDE6AP16499 860 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 PKP1Q13835 747 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 CAVIN4Q5BKX8 364 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 DHX32Q7L7V1 743 aaKnown RBP16.85■□□□□ 0.29
LIG3-205ENST00000585941 AMIGO3Q86WK7 504 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 PUS7LQ9H0K6 701 aaKnown RBP16.85■□□□□ 0.29
LIG3-205ENST00000585941 TRIM37O94972 964 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 TOB2Q14106 344 aaPredicted RBP16.85■□□□□ 0.29
LIG3-205ENST00000585941 NFIXQ14938 502 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms