RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 MRC1P22897 1456 aa12.37□□□□□ -0.43
TOP3A-209ENST00000580095 ZMYM1Q5SVZ6 1142 aa12.37□□□□□ -0.43
TOP3A-209ENST00000580095 CCDC191Q8NCU4 936 aa12.37□□□□□ -0.43
TOP3A-209ENST00000580095 NSUN7Q8NE18 718 aaKnown RBP12.37□□□□□ -0.43
TOP3A-209ENST00000580095 DENND2AQ9ULE3 1009 aa12.37□□□□□ -0.43
TOP3A-209ENST00000580095 ZAP70P43403 619 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 HLFQ16534 295 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 UVSSAQ2YD98 709 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 XAGE2Q96GT9 111 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 SCAND2PQ9GZW5 306 aaPredicted RBP12.36□□□□□ -0.43
TOP3A-209ENST00000580095 TMOD3Q9NYL9 352 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 COL18A1P39060 1754 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 KAT6BQ8WYB5 2073 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 RNF113AO15541 343 aaKnown RBP12.36□□□□□ -0.43
TOP3A-209ENST00000580095 TTC39AQ5SRH9 613 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 KIF1AQ12756 1690 aa12.36□□□□□ -0.43
TOP3A-209ENST00000580095 ERVV-2B6SEH9 535 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 TPM2P07951 284 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 PIGBQ92521 554 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 DNAJC25Q9H1X3 360 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 SLAIN2Q9P270 581 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 SH3TC1Q8TE82 1336 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 SNAP23O00161 211 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 PUS7LQ9H0K6 701 aaKnown RBP12.35□□□□□ -0.43
TOP3A-209ENST00000580095 ALDH8A1Q9H2A2 487 aaPredicted RBP12.35□□□□□ -0.43
TOP3A-209ENST00000580095 CBX8Q9HC52 389 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 PYCARDQ9ULZ3 195 aa12.35□□□□□ -0.43
TOP3A-209ENST00000580095 AFDNP55196 1824 aaKnown RBP12.35□□□□□ -0.43
TOP3A-209ENST00000580095 FOXP2O15409 715 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 MCM5P33992 734 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 HELBQ8NG08 1087 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-209ENST00000580095 NKX2-3Q8TAU0 364 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 KCNF1Q9H3M0 494 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 ZNF335Q9H4Z2 1342 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-209ENST00000580095 PFKFB2O60825 505 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 PDIA3P30101 505 aaKnown RBP12.34□□□□□ -0.43
TOP3A-209ENST00000580095 TCIRG1Q13488 830 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 NOLC1Q14978 699 aaKnown RBP eCLIP12.34□□□□□ -0.43
TOP3A-209ENST00000580095 HELLSQ9NRZ9 838 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 NRBP1Q9UHY1 535 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 CPDO75976 1380 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 ARFGEF2Q9Y6D5 1785 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 EXOSC10Q01780 885 aaKnown RBP12.34□□□□□ -0.43
TOP3A-209ENST00000580095 USP28Q96RU2 1077 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 GREM2Q9H772 168 aa12.34□□□□□ -0.43
TOP3A-209ENST00000580095 ELP1O95163 1332 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 PTGS1P23219 599 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 CCDC158Q5M9N0 1113 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 FAM200AQ8TCP9 573 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 GOLPH3LQ9H4A5 285 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 FGAP02671 866 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 POLR3DP05423 398 aaPredicted RBP12.33□□□□□ -0.44
TOP3A-209ENST00000580095 RXRAP19793 462 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 ADD1P35611 737 aaKnown RBP12.33□□□□□ -0.44
TOP3A-209ENST00000580095 LRMPQ12912 555 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 IFIT5Q13325 482 aaKnown RBP12.33□□□□□ -0.44
TOP3A-209ENST00000580095 DRC7Q8IY82 874 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 ISCA1Q9BUE6 129 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 DSCC1Q9BVC3 393 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 TBC1D2BQ9UPU7 963 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 LTBP4Q8N2S1 1624 aa12.33□□□□□ -0.44
TOP3A-209ENST00000580095 PALLDQ8WX93 1383 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 METTL24Q5JXM2 366 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 LDHAL6AQ6ZMR3 332 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 CARD10Q9BWT7 1032 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 CLSTN2Q9H4D0 955 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 GLI3P10071 1580 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 KIF6Q6ZMV9 814 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 DHX37Q8IY37 1157 aaKnown RBP12.32□□□□□ -0.44
TOP3A-209ENST00000580095 SMARCC2Q8TAQ2 1214 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 INCENPQ9NQS7 918 aa12.32□□□□□ -0.44
TOP3A-209ENST00000580095 COL5A2P05997 1499 aaPredicted RBP12.32□□□□□ -0.44
TOP3A-209ENST00000580095 FDPSP14324 419 aaKnown RBP12.31□□□□□ -0.44
TOP3A-209ENST00000580095 ME1P48163 572 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 ZNF165P49910 485 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 SASS6Q6UVJ0 657 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 ILDR1Q86SU0 546 aaPredicted RBP12.31□□□□□ -0.44
TOP3A-209ENST00000580095 CCAR1Q8IX12 1150 aaKnown RBP12.31□□□□□ -0.44
TOP3A-209ENST00000580095 STK11IPQ8N1F8 1099 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 PIBF1Q8WXW3 757 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 TRIM5Q9C035 493 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 ATG3Q9NT62 314 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 BTG4Q9NY30 223 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 IDH1O75874 414 aaKnown RBP12.31□□□□□ -0.44
TOP3A-209ENST00000580095 ITGA6P23229 1130 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 SLC4A9Q96Q91 983 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 APPP05067 770 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 HMGB1P09429 215 aaKnown RBP12.31□□□□□ -0.44
TOP3A-209ENST00000580095 MCAMP43121 646 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 NKX1-1Q15270 411 aaPredicted RBP12.31□□□□□ -0.44
TOP3A-209ENST00000580095 CCDC144CPQ8IYA2 1237 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 GPR108Q9NPR9 543 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 CNNM1Q9NRU3 951 aa12.31□□□□□ -0.44
TOP3A-209ENST00000580095 KCPQ6ZWJ8 1503 aa12.3□□□□□ -0.44
TOP3A-209ENST00000580095 KLF18A0A0U1RQI7 1052 aa12.3□□□□□ -0.44
TOP3A-209ENST00000580095 PRC1O43663 620 aa12.3□□□□□ -0.44
TOP3A-209ENST00000580095 ATP2B3Q16720 1220 aa12.3□□□□□ -0.44
TOP3A-209ENST00000580095 C11orf57Q6ZUT1 292 aaPredicted RBP12.3□□□□□ -0.44
TOP3A-209ENST00000580095 CCDC186Q7Z3E2 898 aa12.3□□□□□ -0.44
TOP3A-209ENST00000580095 DDX19AQ9NUU7 478 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 727.9 ms