RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 V9GY48 417 aaPredicted RBP12.66□□□□□ -0.38
CIITA-208ENST00000572665 ITGB4P16144 1822 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 PLEKHG2Q9H7P9 1386 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 USP17L15C9J2P7 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L10C9JJH3 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L13C9JLJ4 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L12C9JPN9 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L11C9JVI0 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L21D6R901 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L18D6R9N7 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L22D6RA61 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L17D6RBQ6 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L19D6RCP7 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L20D6RJB6 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 ERVH48-1M5A8F1 160 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 ADH1CP00326 375 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 USP17L24Q0WX57 530 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 CRTC2Q53ET0 693 aaPredicted RBP12.65□□□□□ -0.38
CIITA-208ENST00000572665 USTQ9Y2C2 406 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 PALLDQ8WX93 1383 aa12.65□□□□□ -0.38
CIITA-208ENST00000572665 TAF1LQ8IZX4 1826 aa12.65□□□□□ -0.39
CIITA-208ENST00000572665 RASA1P20936 1047 aa12.64□□□□□ -0.39
CIITA-208ENST00000572665 TRIM50Q86XT4 487 aa12.64□□□□□ -0.39
CIITA-208ENST00000572665 PKD2L1Q9P0L9 805 aa12.64□□□□□ -0.39
CIITA-208ENST00000572665 NCAPD2Q15021 1401 aa12.63□□□□□ -0.39
CIITA-208ENST00000572665 KCNQ4P56696 695 aa12.63□□□□□ -0.39
CIITA-208ENST00000572665 PDE4CQ08493 712 aa12.63□□□□□ -0.39
CIITA-208ENST00000572665 PTK7Q13308 1070 aa12.63□□□□□ -0.39
CIITA-208ENST00000572665 OGFOD1Q8N543 542 aa12.63□□□□□ -0.39
CIITA-208ENST00000572665 ZMIZ1Q9ULJ6 1067 aa12.63□□□□□ -0.39
CIITA-208ENST00000572665 CYP27B1O15528 508 aa12.62□□□□□ -0.39
CIITA-208ENST00000572665 CLDN10P78369 228 aa12.62□□□□□ -0.39
CIITA-208ENST00000572665 USP4Q13107 963 aa12.62□□□□□ -0.39
CIITA-208ENST00000572665 IFNL2Q8IZJ0 200 aa12.62□□□□□ -0.39
CIITA-208ENST00000572665 TMOD3Q9NYL9 352 aa12.62□□□□□ -0.39
CIITA-208ENST00000572665 NOVA2Q9UNW9 492 aaKnown RBP12.62□□□□□ -0.39
CIITA-208ENST00000572665 GRIN3BO60391 1043 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 HSP90AB1P08238 724 aaKnown RBP12.61□□□□□ -0.39
CIITA-208ENST00000572665 ATP1A2P50993 1020 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 GTF2IP78347 998 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 FOXC1Q12948 553 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 NR5A1Q13285 461 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 COL23A1Q86Y22 540 aaPredicted RBP12.61□□□□□ -0.39
CIITA-208ENST00000572665 POLKQ9UBT6 870 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 C4BP0C0L5 1744 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 TOGARAM1Q9Y4F4 1720 aa12.61□□□□□ -0.39
CIITA-208ENST00000572665 DHX9Q08211 1270 aaKnown RBP12.6□□□□□ -0.39
CIITA-208ENST00000572665 ZNF784Q8NCA9 323 aaPredicted RBP12.6□□□□□ -0.39
CIITA-208ENST00000572665 CCER1Q8TC90 406 aaPredicted RBP12.6□□□□□ -0.39
CIITA-208ENST00000572665 DNAAF2Q9NVR5 837 aaKnown RBP12.6□□□□□ -0.39
CIITA-208ENST00000572665 TMEM88BA6NKF7 163 aa12.59□□□□□ -0.39
CIITA-208ENST00000572665 SCTRP47872 440 aa12.59□□□□□ -0.39
CIITA-208ENST00000572665 CCDC116Q8IYX3 515 aa12.59□□□□□ -0.39
CIITA-208ENST00000572665 STK32AQ8WU08 396 aa12.59□□□□□ -0.39
CIITA-208ENST00000572665 PIGBQ92521 554 aa12.59□□□□□ -0.39
CIITA-208ENST00000572665 TMPRSS4Q9NRS4 437 aa12.59□□□□□ -0.39
CIITA-208ENST00000572665 MYCP01106 439 aaPredicted RBP12.58□□□□□ -0.4
CIITA-208ENST00000572665 NR3C2P08235 984 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 PHKG2P15735 406 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 SSFA2P28290 1259 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 TNNT2P45379 298 aaPredicted RBP12.58□□□□□ -0.4
CIITA-208ENST00000572665 ERVK-9P63128 1117 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 LARGE2Q8N3Y3 721 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 ZNF594Q96JF6 807 aaPredicted RBP12.58□□□□□ -0.4
CIITA-208ENST00000572665 PANK3Q9H999 370 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 KIAA1024Q9UPX6 916 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 PCDHGA11Q9Y5H2 935 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 CD2APQ9Y5K6 639 aa12.58□□□□□ -0.4
CIITA-208ENST00000572665 UBR3Q6ZT12 1888 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 LOC102724428A0A0B4J2F2 783 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 CARNS1A5YM72 827 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 ZBTB7BO15156 539 aaPredicted RBP12.57□□□□□ -0.4
CIITA-208ENST00000572665 ALDH1A1P00352 501 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 HSPA5P11021 654 aaKnown RBP12.57□□□□□ -0.4
CIITA-208ENST00000572665 SIK1P57059 783 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 EIF4A2Q14240 407 aaKnown RBP12.57□□□□□ -0.4
CIITA-208ENST00000572665 AMOTQ4VCS5 1084 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 PLEKHO1Q53GL0 409 aaPredicted RBP12.57□□□□□ -0.4
CIITA-208ENST00000572665 PPP1R26Q5T8A7 1209 aaPredicted RBP12.57□□□□□ -0.4
CIITA-208ENST00000572665 TMEM164Q5U3C3 297 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 ANKMY2Q8IV38 441 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 SIX5Q8N196 739 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 KNSTRNQ9Y448 316 aa12.57□□□□□ -0.4
CIITA-208ENST00000572665 ERVV-2B6SEH9 535 aa12.56□□□□□ -0.4
CIITA-208ENST00000572665 GDF9O60383 454 aa12.56□□□□□ -0.4
CIITA-208ENST00000572665 MSL1Q68DK7 614 aa12.56□□□□□ -0.4
CIITA-208ENST00000572665 CC2D2BQ6DHV5 1058 aa12.56□□□□□ -0.4
CIITA-208ENST00000572665 MORC1Q86VD1 984 aa12.56□□□□□ -0.4
CIITA-208ENST00000572665 SNIP1Q8TAD8 396 aaKnown RBP12.56□□□□□ -0.4
CIITA-208ENST00000572665 DCAF5Q96JK2 942 aa12.56□□□□□ -0.4
CIITA-208ENST00000572665 IGSF1Q8N6C5 1336 aa12.56□□□□□ -0.4
CIITA-208ENST00000572665 DKK1O94907 266 aa12.55□□□□□ -0.4
CIITA-208ENST00000572665 DPYDQ12882 1025 aa12.55□□□□□ -0.4
CIITA-208ENST00000572665 NLGN2Q8NFZ4 835 aa12.55□□□□□ -0.4
CIITA-208ENST00000572665 FAM200AQ8TCP9 573 aa12.55□□□□□ -0.4
CIITA-208ENST00000572665 CYLDQ9NQC7 956 aa12.55□□□□□ -0.4
CIITA-208ENST00000572665 ZNF831Q5JPB2 1677 aa12.54□□□□□ -0.4
CIITA-208ENST00000572665 C1orf141Q5JVX7 400 aa12.54□□□□□ -0.4
CIITA-208ENST00000572665 CCDC102BQ68D86 513 aa12.53□□□□□ -0.4
CIITA-208ENST00000572665 OSBPL3Q9H4L5 887 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms