RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TTC12Q9H892 705 aaPredicted RBP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 MAST3O60307 1309 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 ZAP70P43403 619 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 METTL24Q5JXM2 366 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 USPL1Q5W0Q7 1092 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 LDHAL6AQ6ZMR3 332 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 C17orf53Q8N3J3 647 aaPredicted RBP10.33□□□□□ -0.76
LINC00558-201ENST00000569422 FBXW7Q969H0 707 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 CCDC39Q9UFE4 941 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 N4BP2Q86UW6 1770 aaPredicted RBP10.33□□□□□ -0.76
LINC00558-201ENST00000569422 CPDO75976 1380 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 KIF1AQ12756 1690 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 E7EWF7 191 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 RNF113AO15541 343 aaKnown RBP10.33□□□□□ -0.76
LINC00558-201ENST00000569422 CNNM1Q9NRU3 951 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 ZKSCAN5Q9Y2L8 839 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 ALS2Q96Q42 1657 aa10.33□□□□□ -0.76
LINC00558-201ENST00000569422 SNAP23O00161 211 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 OTUD7BQ6GQQ9 843 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 DHX32Q7L7V1 743 aaKnown RBP10.32□□□□□ -0.76
LINC00558-201ENST00000569422 STARD3NLO95772 234 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 APPP05067 770 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 NUP62CLQ9H1M0 184 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 GREM2Q9H772 168 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 ATG3Q9NT62 314 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 TRMT112Q9UI30 125 aaKnown RBP10.32□□□□□ -0.76
LINC00558-201ENST00000569422 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.32□□□□□ -0.76
LINC00558-201ENST00000569422 TCHHQ07283 1943 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 ZMYM1Q5SVZ6 1142 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 STK11IPQ8N1F8 1099 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 LEO1Q8WVC0 666 aaPredicted RBP10.32□□□□□ -0.76
LINC00558-201ENST00000569422 TNMDQ9H2S6 317 aa10.32□□□□□ -0.76
LINC00558-201ENST00000569422 PTPDC1A2A3K4 754 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 IDH1O75874 414 aaKnown RBP10.31□□□□□ -0.76
LINC00558-201ENST00000569422 LETM1O95202 739 aaPredicted RBP10.31□□□□□ -0.76
LINC00558-201ENST00000569422 ITGA6P23229 1130 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 FAM193AP78312 1265 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 PUS7LQ9H0K6 701 aaKnown RBP10.31□□□□□ -0.76
LINC00558-201ENST00000569422 HELLSQ9NRZ9 838 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 ZBTB1Q9Y2K1 713 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 SOS2Q07890 1332 aaPredicted RBP10.31□□□□□ -0.76
LINC00558-201ENST00000569422 A0A087WWV3 80 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 RAD21O60216 631 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 NR1I2O75469 434 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 TSGA10IPQ3SY00 556 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 LUZP1Q86V48 1076 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 ACSBG1Q96GR2 724 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 ISCA1Q9BUE6 129 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 MTMR7Q9Y216 660 aa10.31□□□□□ -0.76
LINC00558-201ENST00000569422 COL5A2P05997 1499 aaPredicted RBP10.31□□□□□ -0.76
LINC00558-201ENST00000569422 CCDC192P0DO97 292 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 MAP3K11Q16584 847 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 DCCP43146 1447 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 SIPA1L3O60292 1781 aaPredicted RBP10.3□□□□□ -0.76
LINC00558-201ENST00000569422 SCN11AQ9UI33 1791 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 ADAMTS2O95450 1211 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 NKX1-1Q15270 411 aaPredicted RBP10.3□□□□□ -0.76
LINC00558-201ENST00000569422 ATP2B3Q16720 1220 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 ERCC4Q92889 916 aaPredicted RBP10.3□□□□□ -0.76
LINC00558-201ENST00000569422 SCAND2PQ9GZW5 306 aaPredicted RBP10.3□□□□□ -0.76
LINC00558-201ENST00000569422 SH3TC1Q8TE82 1336 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 AP5Z1O43299 807 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 PGBD1Q96JS3 809 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 GJB4Q9NTQ9 266 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 DENND2AQ9ULE3 1009 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 STRCP1A6NGW2 1772 aa10.3□□□□□ -0.76
LINC00558-201ENST00000569422 IRS4O14654 1257 aaPredicted RBP10.29□□□□□ -0.76
LINC00558-201ENST00000569422 CTDNEP1O95476 244 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 FGAP02671 866 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 RXRAP19793 462 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 ZBTB38Q8NAP3 1195 aaPredicted RBP10.29□□□□□ -0.76
LINC00558-201ENST00000569422 NSUN7Q8NE18 718 aaKnown RBP10.29□□□□□ -0.76
LINC00558-201ENST00000569422 AKAP2Q9Y2D5 859 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 MAFGO15525 162 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 OFD1O75665 1012 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 POLR3DP05423 398 aaPredicted RBP10.29□□□□□ -0.76
LINC00558-201ENST00000569422 HS1BP3Q53T59 392 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 KCTD17Q8N5Z5 321 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 SLC4A9Q96Q91 983 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 DSCC1Q9BVC3 393 aa10.29□□□□□ -0.76
LINC00558-201ENST00000569422 TYRO3Q06418 890 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 RESTQ13127 1097 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 IMMTQ16891 758 aaKnown RBP10.28□□□□□ -0.76
LINC00558-201ENST00000569422 ANO6Q4KMQ2 910 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 SLC9C2Q5TAH2 1124 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.28□□□□□ -0.76
LINC00558-201ENST00000569422 NLRP10Q86W26 655 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 DRC7Q8IY82 874 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 CCDC144CPQ8IYA2 1237 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 COL18A1P39060 1754 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 EXOC5O00471 708 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 PCCAP05165 728 aaPredicted RBP10.28□□□□□ -0.76
LINC00558-201ENST00000569422 PDIA3P30101 505 aaKnown RBP10.28□□□□□ -0.76
LINC00558-201ENST00000569422 GIGYF2Q6Y7W6 1299 aaKnown RBP10.28□□□□□ -0.76
LINC00558-201ENST00000569422 RALYLQ86SE5 291 aaKnown RBP10.28□□□□□ -0.76
LINC00558-201ENST00000569422 TTLL11Q8NHH1 800 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 GPR108Q9NPR9 543 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 ANKRD18BA2A2Z9 1011 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 GPAA1O43292 621 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 PFKFB2O60825 505 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms