RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ERVH48-1M5A8F1 160 aa6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 ZBTB39O15060 712 aa6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 NASPP49321 788 aaPredicted RBP6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 NFX1Q12986 1120 aaKnown RBP6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 ARSHQ5FYA8 562 aa6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 CCSAPQ6IQ19 270 aaPredicted RBP6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 Q6ZVU0 165 aa6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 RASGRP4Q8TDF6 673 aa6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 SLC16A10Q8TF71 515 aa6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 PKNOX2Q96KN3 472 aa6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 TMX4Q9H1E5 349 aaPredicted RBP6.71□□□□□ -1.34
VPS35P1-201ENST00000563400 CLIP1P30622 1438 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 USP31Q70CQ4 1352 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 USP5P45974 858 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 LMOD3Q0VAK6 560 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 OS9Q13438 667 aaPredicted RBP6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 LRRC41Q15345 812 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 FAM26DQ5JW98 314 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 C16orf46Q6P387 395 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 FAM43BQ6ZT52 329 aaPredicted RBP6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 SCG3Q8WXD2 468 aaKnown RBP6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 ZNF512BQ96KM6 892 aaPredicted RBP6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 ARPC5LQ9BPX5 153 aa6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 FBXO9Q9UK97 447 aaPredicted RBP6.7□□□□□ -1.34
VPS35P1-201ENST00000563400 SHROOM2Q13796 1616 aa6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 FOXO3O43524 673 aa6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 IGFBP4P22692 258 aa6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 EIF4BP23588 611 aaKnown RBP6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 EXOSC10Q01780 885 aaKnown RBP6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 ORC1Q13415 861 aa6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 ALKBH2Q6NS38 261 aa6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 NPAS3Q8IXF0 933 aa6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 ZNF784Q8NCA9 323 aaPredicted RBP6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 POLIQ9UNA4 740 aa6.69□□□□□ -1.34
VPS35P1-201ENST00000563400 UHRF1BP1LA0JNW5 1464 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 PLB1Q6P1J6 1458 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 M0R2N6 131 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 OPLAHO14841 1288 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 KIF3BO15066 747 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 TSPAN6O43657 245 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 WFS1O76024 890 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 SQSTM1Q13501 440 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 TREML4Q6UXN2 200 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 HOMER1Q86YM7 354 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 SEC16BQ96JE7 1060 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 CSRNP1Q96S65 589 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 SENP7Q9BQF6 1050 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 TMPRSS4Q9NRS4 437 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 NXF1Q9UBU9 619 aaKnown RBP6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 PHLDB1Q86UU1 1377 aa6.68□□□□□ -1.34
VPS35P1-201ENST00000563400 KAT6BQ8WYB5 2073 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 TTLL8A6PVC2 850 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 CCER2I3L3R5 266 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 TERTO14746 1132 aaKnown RBP6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 ADH1AP07327 375 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 POU3F3P20264 500 aaPredicted RBP6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 NFE2Q16621 373 aaPredicted RBP6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 COX20Q5RI15 118 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 WDR78Q5VTH9 848 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 TTC39BQ5VTQ0 682 aaPredicted RBP6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 ERMP1Q7Z2K6 904 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 TRPM4Q8TD43 1214 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 FBF1Q8TES7 1133 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 TMX1Q9H3N1 280 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 ARNT2Q9HBZ2 717 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 ZNF358Q9NW07 568 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 STIM2Q9P246 746 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 EFR3BQ9Y2G0 817 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 LEMD3Q9Y2U8 911 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 RIMBP3CA6NJZ7 1639 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 RIMBP3BA6NNM3 1639 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 RIMBP3Q9UFD9 1639 aa6.67□□□□□ -1.34
VPS35P1-201ENST00000563400 SPINT1O43278 529 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 PLIN1O60240 522 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 CAND2O75155 1236 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 ALDH1L1O75891 902 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 BPNT1O95861 308 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 NOS2P35228 1153 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 RELBQ01201 579 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 PPP4R4Q6NUP7 873 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 AMOTL1Q8IY63 956 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 GJD3Q8N144 294 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 OSBPL7Q9BZF2 842 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 MAP3K20Q9NYL2 800 aaKnown RBP6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 SPG7Q9UQ90 795 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 ATP8A1Q9Y2Q0 1164 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 CCDC18Q5T9S5 1454 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 ATAD2Q6PL18 1390 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 IFRD1O00458 451 aaPredicted RBP6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 KRT18P05783 430 aaKnown RBP6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 TAF1CQ15572 869 aaPredicted RBP6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 PI16Q6UXB8 463 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 C16orf86Q6ZW13 317 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 C14orf80Q86SX3 495 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 TNS4Q8IZW8 715 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 RELTQ969Z4 430 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 FEZ1Q99689 392 aa6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 AVENQ9NQS1 362 aaPredicted RBP6.66□□□□□ -1.34
VPS35P1-201ENST00000563400 GINM1Q9NU53 330 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 250.8 ms