RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 IGLV1-40P01703 118 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 FAM69CQ0P6D2 419 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 CEP135Q66GS9 1140 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 ARMC10Q8N2F6 343 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 CCER1Q8TC90 406 aaPredicted RBP8.31□□□□□ -1.08
VPS13C-210ENST00000561258 DCAF11Q8TEB1 546 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 MKNK1Q9BUB5 465 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 STOML1Q9UBI4 398 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 SSFA2P28290 1259 aa8.3□□□□□ -1.08
VPS13C-210ENST00000561258 CD68P34810 354 aaPredicted RBP8.3□□□□□ -1.08
VPS13C-210ENST00000561258 NAA30Q147X3 362 aaPredicted RBP8.3□□□□□ -1.08
VPS13C-210ENST00000561258 SWI5Q1ZZU3 235 aa8.3□□□□□ -1.08
VPS13C-210ENST00000561258 ACAD11Q709F0 780 aa8.3□□□□□ -1.08
VPS13C-210ENST00000561258 CACTIN-AS1Q8N1I8 211 aa8.3□□□□□ -1.08
VPS13C-210ENST00000561258 CARD10Q9BWT7 1032 aa8.3□□□□□ -1.08
VPS13C-210ENST00000561258 GOLGA2P5Q9HBQ8 144 aa8.3□□□□□ -1.08
VPS13C-210ENST00000561258 TM4SF5O14894 197 aa8.29□□□□□ -1.08
VPS13C-210ENST00000561258 HYAL2Q12891 473 aa8.29□□□□□ -1.08
VPS13C-210ENST00000561258 PIK3R5Q8WYR1 880 aa8.29□□□□□ -1.08
VPS13C-210ENST00000561258 CLP1Q92989 425 aaKnown RBP8.29□□□□□ -1.08
VPS13C-210ENST00000561258 KRTAP9-9Q9BYP9 154 aa8.29□□□□□ -1.08
VPS13C-210ENST00000561258 KRTAP9-4Q9BYQ2 154 aa8.29□□□□□ -1.08
VPS13C-210ENST00000561258 RASSF4Q9H2L5 321 aa8.29□□□□□ -1.08
VPS13C-210ENST00000561258 COL17A1Q9UMD9 1497 aaPredicted RBP8.29□□□□□ -1.08
VPS13C-210ENST00000561258 E9PSI1 815 aa8.28□□□□□ -1.08
VPS13C-210ENST00000561258 DHX15O43143 795 aaKnown RBP8.28□□□□□ -1.08
VPS13C-210ENST00000561258 CDC27P30260 824 aa8.28□□□□□ -1.08
VPS13C-210ENST00000561258 SCNN1AP37088 669 aa8.28□□□□□ -1.08
VPS13C-210ENST00000561258 SPACA7Q96KW9 195 aa8.28□□□□□ -1.08
VPS13C-210ENST00000561258 GSC2O15499 205 aa8.27□□□□□ -1.09
VPS13C-210ENST00000561258 COBLO75128 1261 aa8.27□□□□□ -1.09
VPS13C-210ENST00000561258 SMNDC1O75940 238 aaKnown RBP eCLIP8.27□□□□□ -1.09
VPS13C-210ENST00000561258 CYP2E1P05181 493 aaPredicted RBP8.27□□□□□ -1.09
VPS13C-210ENST00000561258 ZAP70P43403 619 aa8.27□□□□□ -1.09
VPS13C-210ENST00000561258 TTC39BQ5VTQ0 682 aaPredicted RBP8.27□□□□□ -1.09
VPS13C-210ENST00000561258 KIAA1211Q6ZU35 1233 aa8.27□□□□□ -1.09
VPS13C-210ENST00000561258 GPR152Q8TDT2 470 aa8.27□□□□□ -1.09
VPS13C-210ENST00000561258 SH2B1Q9NRF2 756 aaPredicted RBP8.27□□□□□ -1.09
VPS13C-210ENST00000561258 FSCN2O14926 492 aa8.26□□□□□ -1.09
VPS13C-210ENST00000561258 ZBTB39O15060 712 aa8.26□□□□□ -1.09
VPS13C-210ENST00000561258 DDX3YO15523 660 aaKnown RBP8.26□□□□□ -1.09
VPS13C-210ENST00000561258 ZDHHC13Q8IUH4 622 aa8.26□□□□□ -1.09
VPS13C-210ENST00000561258 CEP41Q9BYV8 373 aa8.26□□□□□ -1.09
VPS13C-210ENST00000561258 OAS3Q9Y6K5 1087 aaKnown RBP8.26□□□□□ -1.09
VPS13C-210ENST00000561258 KIAA1324LA8MWY0 1029 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-210ENST00000561258 EPHA1P21709 976 aa8.25□□□□□ -1.09
VPS13C-210ENST00000561258 IRAK1P51617 712 aa8.25□□□□□ -1.09
VPS13C-210ENST00000561258 DUOXA2Q1HG44 320 aa8.25□□□□□ -1.09
VPS13C-210ENST00000561258 TRIM42Q8IWZ5 723 aa8.25□□□□□ -1.09
VPS13C-210ENST00000561258 UTP4Q969X6 686 aaKnown RBP8.25□□□□□ -1.09
VPS13C-210ENST00000561258 COL26A1Q96A83 441 aa8.25□□□□□ -1.09
VPS13C-210ENST00000561258 C7orf69Q9H7B7 122 aa8.25□□□□□ -1.09
VPS13C-210ENST00000561258 FAM13BQ9NYF5 915 aa8.25□□□□□ -1.09
VPS13C-210ENST00000561258 CXXC1Q9P0U4 656 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-210ENST00000561258 HMX2A2RU54 273 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 ADAM11O75078 769 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 ADAMTS4O75173 837 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 KIF4AO95239 1232 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 ATP2B4P23634 1241 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 NFIAQ12857 509 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 UBASH3BQ8TF42 649 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 KLHDC7BQ96G42 594 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 FAM46AQ96IP4 442 aaKnown RBP8.24□□□□□ -1.09
VPS13C-210ENST00000561258 PBX4Q9BYU1 374 aa8.24□□□□□ -1.09
VPS13C-210ENST00000561258 ABI2Q9NYB9 513 aaPredicted RBP8.24□□□□□ -1.09
VPS13C-210ENST00000561258 FNDC3AQ9Y2H6 1198 aaKnown RBP8.24□□□□□ -1.09
VPS13C-210ENST00000561258 PAX4O43316 350 aa8.23□□□□□ -1.09
VPS13C-210ENST00000561258 GP2P55259 537 aaKnown RBP8.23□□□□□ -1.09
VPS13C-210ENST00000561258 CEP120Q8N960 986 aa8.23□□□□□ -1.09
VPS13C-210ENST00000561258 POP1Q99575 1024 aaKnown RBP8.23□□□□□ -1.09
VPS13C-210ENST00000561258 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.23□□□□□ -1.09
VPS13C-210ENST00000561258 SOWAHDA6NJG2 315 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 BTBD11A6QL63 1104 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 UVSSAQ2YD98 709 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 FAM117BQ6P1L5 589 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 DNAJC14Q6Y2X3 702 aaPredicted RBP8.22□□□□□ -1.09
VPS13C-210ENST00000561258 NCAPG2Q86XI2 1143 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 KLHL23Q8NBE8 558 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 MYRFLQ96LU7 910 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 STIM2Q9P246 746 aa8.22□□□□□ -1.09
VPS13C-210ENST00000561258 RBM47A0AV96 593 aaKnown RBP8.21□□□□□ -1.1
VPS13C-210ENST00000561258 TAL1P17542 331 aaPredicted RBP8.21□□□□□ -1.1
VPS13C-210ENST00000561258 SERPINB4P48594 390 aa8.21□□□□□ -1.1
VPS13C-210ENST00000561258 RNF43Q68DV7 783 aa8.21□□□□□ -1.1
VPS13C-210ENST00000561258 SEC31BQ9NQW1 1179 aa8.21□□□□□ -1.1
VPS13C-210ENST00000561258 TMEM63CQ9P1W3 806 aa8.21□□□□□ -1.1
VPS13C-210ENST00000561258 KANSL3Q9P2N6 904 aa8.21□□□□□ -1.1
VPS13C-210ENST00000561258 PRR19A6NJB7 356 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 UNCXA6NJT0 531 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 ACPPP15309 386 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 PTPRAP18433 802 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 DBNDD2Q9BQY9 259 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 ADAM19Q9H013 955 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 ELP3Q9H9T3 547 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 CNTN3Q9P232 1028 aa8.2□□□□□ -1.1
VPS13C-210ENST00000561258 ERCC3P19447 782 aa8.19□□□□□ -1.1
VPS13C-210ENST00000561258 SPINK2P20155 84 aa8.19□□□□□ -1.1
VPS13C-210ENST00000561258 FAM20CQ8IXL6 584 aa8.19□□□□□ -1.1
VPS13C-210ENST00000561258 FMNL2Q96PY5 1086 aa8.19□□□□□ -1.1
VPS13C-210ENST00000561258 BMP3P12645 472 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms