RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CACTINQ8WUQ7 758 aaKnown RBP13.26□□□□□ -0.29
CUX1-218ENST00000560541 DDX17Q92841 729 aaKnown RBP13.26□□□□□ -0.29
CUX1-218ENST00000560541 KDM6AO15550 1401 aaPredicted RBP13.26□□□□□ -0.29
CUX1-218ENST00000560541 RBM43Q6ZSC3 357 aaKnown RBP13.26□□□□□ -0.29
CUX1-218ENST00000560541 KRT28Q7Z3Y7 464 aa13.26□□□□□ -0.29
CUX1-218ENST00000560541 TDRD7Q8NHU6 1098 aaKnown RBP13.26□□□□□ -0.29
CUX1-218ENST00000560541 CSB-PGBD3P0DP91 1061 aa13.26□□□□□ -0.29
CUX1-218ENST00000560541 CCAR1Q8IX12 1150 aaKnown RBP13.26□□□□□ -0.29
CUX1-218ENST00000560541 HAUS7Q99871 368 aa13.26□□□□□ -0.29
CUX1-218ENST00000560541 GOLPH3LQ9H4A5 285 aa13.26□□□□□ -0.29
CUX1-218ENST00000560541 PTPDC1A2A3K4 754 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 PHKG2P15735 406 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 NSUN7Q8NE18 718 aaKnown RBP13.25□□□□□ -0.29
CUX1-218ENST00000560541 ZNF592Q92610 1267 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 TOMM22Q9NS69 142 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 TAOK2Q9UL54 1235 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 GOLGA6L19H0YKK7 550 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 CTDNEP1O95476 244 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 USP28Q96RU2 1077 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 CFAP45Q9UL16 551 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 C5P01031 1676 aa13.25□□□□□ -0.29
CUX1-218ENST00000560541 OVOS2A0A0G2JMS6 1433 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 NAA30Q147X3 362 aaPredicted RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 LRP10Q7Z4F1 713 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 RSPH14Q9UHP6 348 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 SNRPA1P09661 255 aaKnown RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 TNNT1P13805 278 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 ADD1P35611 737 aaKnown RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 KBTBD3Q8NAB2 608 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 CABLES1Q8TDN4 633 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 OGFRQ9NZT2 677 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 TATP17735 454 aaPredicted RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 TPD52L1Q16890 204 aaPredicted RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 TTLL5Q6EMB2 1281 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 FILIP1Q7Z7B0 1213 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 GPATCH11Q8N954 259 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 BANK1Q8NDB2 785 aa13.24□□□□□ -0.29
CUX1-218ENST00000560541 ZNF594Q96JF6 807 aaPredicted RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 ZSCAN16Q9H4T2 348 aaPredicted RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 FEZ2Q9UHY8 353 aaPredicted RBP13.24□□□□□ -0.29
CUX1-218ENST00000560541 CHRNA2Q15822 529 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 OTUD7BQ6GQQ9 843 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 DHX32Q7L7V1 743 aaKnown RBP13.23□□□□□ -0.29
CUX1-218ENST00000560541 RAB11FIP4Q86YS3 637 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 GPHNQ9NQX3 736 aaPredicted RBP13.23□□□□□ -0.29
CUX1-218ENST00000560541 PFKFB2O60825 505 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 ME1P48163 572 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 SMARCC2Q8TAQ2 1214 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 PAG1Q9NWQ8 432 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 CALCOCO1Q9P1Z2 691 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 RGPD5Q99666 1765 aa13.23□□□□□ -0.29
CUX1-218ENST00000560541 BECN2A8MW95 431 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 IQCB1Q15051 598 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 RABL6Q3YEC7 729 aaPredicted RBP13.22□□□□□ -0.29
CUX1-218ENST00000560541 MRC1P22897 1456 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 USP27XA6NNY8 438 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 GTF2A1P52655 376 aaPredicted RBP13.22□□□□□ -0.29
CUX1-218ENST00000560541 GABPB1Q06547 395 aaPredicted RBP13.22□□□□□ -0.29
CUX1-218ENST00000560541 CCDC73Q6ZRK6 1079 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 SIPA1L3O60292 1781 aaPredicted RBP13.22□□□□□ -0.29
CUX1-218ENST00000560541 TULP2O00295 520 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 CYP27B1O15528 508 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 KINO60870 393 aaKnown RBP13.22□□□□□ -0.29
CUX1-218ENST00000560541 HAND2P61296 217 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 LRRC24Q50LG9 513 aa13.22□□□□□ -0.29
CUX1-218ENST00000560541 E7EWF7 191 aa13.21□□□□□ -0.29
CUX1-218ENST00000560541 HSP90AB3PQ58FF7 597 aa13.21□□□□□ -0.29
CUX1-218ENST00000560541 IFNL2Q8IZJ0 200 aa13.21□□□□□ -0.29
CUX1-218ENST00000560541 FSIP1Q8NA03 581 aa13.21□□□□□ -0.29
CUX1-218ENST00000560541 FMNL2Q96PY5 1086 aa13.21□□□□□ -0.29
CUX1-218ENST00000560541 MEGF6O75095 1541 aa13.21□□□□□ -0.3
CUX1-218ENST00000560541 HSPD1P10809 573 aaKnown RBP13.21□□□□□ -0.3
CUX1-218ENST00000560541 NCBP1Q09161 790 aaKnown RBP13.21□□□□□ -0.3
CUX1-218ENST00000560541 SNW1Q13573 536 aaKnown RBP13.21□□□□□ -0.3
CUX1-218ENST00000560541 TERF2Q15554 542 aa13.21□□□□□ -0.3
CUX1-218ENST00000560541 STX1AQ16623 288 aa13.21□□□□□ -0.3
CUX1-218ENST00000560541 GEMIN8Q9NWZ8 242 aaKnown RBP13.21□□□□□ -0.3
CUX1-218ENST00000560541 CTIFO43310 598 aaKnown RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 TRHP20396 242 aaPredicted RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 TTLL7Q6ZT98 887 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 ATG9AQ7Z3C6 839 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 CCDC85AQ96PX6 553 aaPredicted RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 TRMT1Q9NXH9 659 aaKnown RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 RCOR1Q9UKL0 485 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 PHRF1Q9P1Y6 1649 aaKnown RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 FKBP4Q02790 459 aaKnown RBP eCLIP13.2□□□□□ -0.3
CUX1-218ENST00000560541 ILDR1Q86SU0 546 aaPredicted RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 ZBTB3Q9H5J0 574 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 GJB4Q9NTQ9 266 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 SLIT3O75094 1523 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 SH3TC1Q8TE82 1336 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 A0A1B0GVL5 298 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 POLR3DP05423 398 aaPredicted RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 CASP7P55210 303 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 CABP4P57796 275 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 NAA16Q6N069 864 aaPredicted RBP13.2□□□□□ -0.3
CUX1-218ENST00000560541 LRRC8AQ8IWT6 810 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 AOPEPQ8N6M6 819 aa13.2□□□□□ -0.3
CUX1-218ENST00000560541 ANKRD7Q92527 254 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms