RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 USP17L3A6NCW0 530 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 USP17L4A6NCW7 530 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 G3V3G9 751 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 H7C1D1 291 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 ZNF280AP59817 542 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-224ENST00000556737 CCDC57Q2TAC2 916 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 TBC1D10BQ4KMP7 808 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-224ENST00000556737 DACT2Q5SW24 774 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 DCAF8Q5TAQ9 597 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 C15orf52Q6ZUT6 534 aaKnown RBP13.03□□□□□ -0.32
SHMT2-224ENST00000556737 USP17L1Q7RTZ2 530 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 AGBL3Q8NEM8 1001 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 HELBQ8NG08 1087 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-224ENST00000556737 ZC3H15Q8WU90 426 aaKnown RBP13.03□□□□□ -0.32
SHMT2-224ENST00000556737 COA1Q9GZY4 146 aa13.03□□□□□ -0.32
SHMT2-224ENST00000556737 RASSF10A6NK89 507 aa13.02□□□□□ -0.33
SHMT2-224ENST00000556737 TAF5LO75529 589 aa13.02□□□□□ -0.33
SHMT2-224ENST00000556737 KIF4BQ2VIQ3 1234 aa13.02□□□□□ -0.33
SHMT2-224ENST00000556737 CST9Q5W186 159 aa13.02□□□□□ -0.33
SHMT2-224ENST00000556737 LDHAL6AQ6ZMR3 332 aa13.02□□□□□ -0.33
SHMT2-224ENST00000556737 MXD3Q9BW11 206 aa13.02□□□□□ -0.33
SHMT2-224ENST00000556737 NOB1Q9ULX3 412 aaKnown RBP13.02□□□□□ -0.33
SHMT2-224ENST00000556737 ASTN2O75129 1339 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-224ENST00000556737 KIF16BQ96L93 1317 aa13.02□□□□□ -0.33
SHMT2-224ENST00000556737 HNRNPUQ00839 825 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT2-224ENST00000556737 PUS3Q9BZE2 481 aaKnown RBP13.01□□□□□ -0.33
SHMT2-224ENST00000556737 POLR2AP24928 1970 aaKnown RBP13□□□□□ -0.33
SHMT2-224ENST00000556737 KCNJ4P48050 445 aa13□□□□□ -0.33
SHMT2-224ENST00000556737 TAF7LQ5H9L4 462 aa13□□□□□ -0.33
SHMT2-224ENST00000556737 STRIP1Q5VSL9 837 aa13□□□□□ -0.33
SHMT2-224ENST00000556737 API5Q9BZZ5 524 aaKnown RBP13□□□□□ -0.33
SHMT2-224ENST00000556737 CNNM1Q9NRU3 951 aa13□□□□□ -0.33
SHMT2-224ENST00000556737 GGA3Q9NZ52 723 aa13□□□□□ -0.33
SHMT2-224ENST00000556737 ECM29Q5VYK3 1845 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 MYO3BQ8WXR4 1341 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 ADM5C9JUS6 153 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 USP17L8P0C7I0 530 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 RFX5P48382 616 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-224ENST00000556737 VEGFBP49765 207 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 DLK2Q6UY11 383 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 CDC37L1Q7L3B6 337 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 CD209Q9NNX6 404 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 MYOZ2Q9NPC6 264 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 RIPOR2Q9Y4F9 1068 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 TLL2Q9Y6L7 1015 aa12.99□□□□□ -0.33
SHMT2-224ENST00000556737 ZBED9Q6R2W3 1325 aa12.98□□□□□ -0.33
SHMT2-224ENST00000556737 CELF2O95319 508 aaKnown RBP12.98□□□□□ -0.33
SHMT2-224ENST00000556737 HSPA1AP0DMV8 641 aaKnown RBP12.98□□□□□ -0.33
SHMT2-224ENST00000556737 HSPA1BP0DMV9 641 aaKnown RBP12.98□□□□□ -0.33
SHMT2-224ENST00000556737 LRRC24Q50LG9 513 aa12.98□□□□□ -0.33
SHMT2-224ENST00000556737 RBM26Q5T8P6 1007 aaKnown RBP12.98□□□□□ -0.33
SHMT2-224ENST00000556737 CERS5Q8N5B7 392 aa12.98□□□□□ -0.33
SHMT2-224ENST00000556737 VGLL2Q8N8G2 317 aa12.98□□□□□ -0.33
SHMT2-224ENST00000556737 KLHDC4Q8TBB5 520 aa12.98□□□□□ -0.33
SHMT2-224ENST00000556737 ARHGAP45Q92619 1136 aa12.98□□□□□ -0.33
SHMT2-224ENST00000556737 ABT1Q9ULW3 272 aaKnown RBP12.98□□□□□ -0.33
SHMT2-224ENST00000556737 TNNQ9UQP3 1299 aa12.98□□□□□ -0.33
SHMT2-224ENST00000556737 MROH5Q6ZUA9 1318 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 PLIN1O60240 522 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 BCAR3O75815 825 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 TRIM27P14373 513 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 IL1R1P14778 569 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 GTF2IP78347 998 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 IFFO2Q5TF58 517 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 USP48Q86UV5 1035 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 FBXW7Q969H0 707 aa12.97□□□□□ -0.33
SHMT2-224ENST00000556737 PITPNM2Q9BZ72 1349 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 UBTFL1P0CB47 393 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-224ENST00000556737 UBE4AQ14139 1066 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 DEFB115Q30KQ5 88 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 ANGEL2Q5VTE6 544 aaKnown RBP12.96□□□□□ -0.33
SHMT2-224ENST00000556737 INTS3Q68E01 1043 aaKnown RBP12.96□□□□□ -0.33
SHMT2-224ENST00000556737 TTLL5Q6EMB2 1281 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 KRT26Q7Z3Y9 468 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 ZNF804AQ7Z570 1209 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 SAPCD2Q86UD0 394 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 MEIS3Q99687 375 aa12.96□□□□□ -0.33
SHMT2-224ENST00000556737 PAPPA2Q9BXP8 1791 aa12.96□□□□□ -0.34
SHMT2-224ENST00000556737 MYH13Q9UKX3 1938 aa12.96□□□□□ -0.34
SHMT2-224ENST00000556737 WDR33Q9C0J8 1336 aaKnown RBP12.95□□□□□ -0.34
SHMT2-224ENST00000556737 GYG1P46976 350 aa12.95□□□□□ -0.34
SHMT2-224ENST00000556737 PTPN12Q05209 780 aaKnown RBP12.95□□□□□ -0.34
SHMT2-224ENST00000556737 SCARF1Q14162 830 aa12.95□□□□□ -0.34
SHMT2-224ENST00000556737 KIAA0825Q8IV33 1275 aa12.95□□□□□ -0.34
SHMT2-224ENST00000556737 DCPSQ96C86 337 aaKnown RBP12.95□□□□□ -0.34
SHMT2-224ENST00000556737 ZBED3Q96IU2 234 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-224ENST00000556737 ZNF408Q9H9D4 720 aa12.95□□□□□ -0.34
SHMT2-224ENST00000556737 LRRFIP2Q9Y608 721 aaKnown RBP12.95□□□□□ -0.34
SHMT2-224ENST00000556737 FAM205AQ6ZU69 1335 aa12.94□□□□□ -0.34
SHMT2-224ENST00000556737 COL1A1P02452 1464 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-224ENST00000556737 WNT10BO00744 389 aa12.94□□□□□ -0.34
SHMT2-224ENST00000556737 NBPF9Q3BBW0 867 aa12.94□□□□□ -0.34
SHMT2-224ENST00000556737 METTL24Q5JXM2 366 aa12.94□□□□□ -0.34
SHMT2-224ENST00000556737 CYP4F22Q6NT55 531 aa12.94□□□□□ -0.34
SHMT2-224ENST00000556737 TDRD7Q8NHU6 1098 aaKnown RBP12.94□□□□□ -0.34
SHMT2-224ENST00000556737 CDCA5Q96FF9 252 aa12.94□□□□□ -0.34
SHMT2-224ENST00000556737 FAM84BQ96KN1 310 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-224ENST00000556737 EYA2O00167 538 aa12.93□□□□□ -0.34
SHMT2-224ENST00000556737 SASH1O94885 1247 aa12.93□□□□□ -0.34
SHMT2-224ENST00000556737 PDE8BO95263 885 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms