RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 KIAA2012Q0VF49 1180 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 MPNDQ8N594 471 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 SLAIN1Q8ND83 568 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 SUPT20HQ8NEM7 779 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 FAM117AQ9C073 453 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 PNNQ9H307 717 aaKnown RBP13.17□□□□□ -0.3
SCFD1-220ENST00000556486 DBNDD1Q9H9R9 158 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 GBA2Q9HCG7 927 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-220ENST00000556486 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.17□□□□□ -0.3
SCFD1-220ENST00000556486 BOLA1Q9Y3E2 137 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 ASTN2O75129 1339 aaPredicted RBP13.16□□□□□ -0.3
SCFD1-220ENST00000556486 H7C1D1 291 aa13.16□□□□□ -0.3
SCFD1-220ENST00000556486 PSMD14O00487 310 aa13.16□□□□□ -0.3
SCFD1-220ENST00000556486 RIMBP2O15034 1052 aa13.16□□□□□ -0.3
SCFD1-220ENST00000556486 TNIP1Q15025 636 aa13.16□□□□□ -0.3
SCFD1-220ENST00000556486 PRPF38BQ5VTL8 546 aaKnown RBP13.16□□□□□ -0.3
SCFD1-220ENST00000556486 PPP1R42Q7Z4L9 355 aa13.16□□□□□ -0.3
SCFD1-220ENST00000556486 RTFDC1Q9BY42 306 aaPredicted RBP13.16□□□□□ -0.3
SCFD1-220ENST00000556486 KCNQ5Q9NR82 932 aa13.16□□□□□ -0.3
SCFD1-220ENST00000556486 COL4A1P02462 1669 aa13.15□□□□□ -0.3
SCFD1-220ENST00000556486 ANKRD36CQ5JPF3 1778 aa13.15□□□□□ -0.3
SCFD1-220ENST00000556486 ZNF316A6NFI3 1004 aaPredicted RBP13.15□□□□□ -0.3
SCFD1-220ENST00000556486 PROSER3Q2NL68 480 aa13.15□□□□□ -0.3
SCFD1-220ENST00000556486 GIGYF2Q6Y7W6 1299 aaKnown RBP13.15□□□□□ -0.3
SCFD1-220ENST00000556486 C2orf69Q8N8R5 385 aa13.15□□□□□ -0.3
SCFD1-220ENST00000556486 UTP14AQ9BVJ6 771 aaKnown RBP13.15□□□□□ -0.3
SCFD1-220ENST00000556486 TMEM121BQ9BXQ6 578 aaPredicted RBP13.15□□□□□ -0.3
SCFD1-220ENST00000556486 BABAM1Q9NWV8 329 aa13.15□□□□□ -0.3
SCFD1-220ENST00000556486 CDHR2Q9BYE9 1310 aa13.14□□□□□ -0.31
SCFD1-220ENST00000556486 DSG2Q14126 1118 aa13.14□□□□□ -0.31
SCFD1-220ENST00000556486 DOK7Q18PE1 504 aa13.14□□□□□ -0.31
SCFD1-220ENST00000556486 SP8Q8IXZ3 490 aa13.14□□□□□ -0.31
SCFD1-220ENST00000556486 NECTIN2Q92692 538 aa13.14□□□□□ -0.31
SCFD1-220ENST00000556486 CSRNP1Q96S65 589 aa13.14□□□□□ -0.31
SCFD1-220ENST00000556486 SAGE1Q9NXZ1 904 aa13.14□□□□□ -0.31
SCFD1-220ENST00000556486 SCAF8Q9UPN6 1271 aaKnown RBP13.14□□□□□ -0.31
SCFD1-220ENST00000556486 EIF2S2P20042 333 aaKnown RBP13.13□□□□□ -0.31
SCFD1-220ENST00000556486 LRP10Q7Z4F1 713 aa13.13□□□□□ -0.31
SCFD1-220ENST00000556486 CTU1Q7Z7A3 348 aaKnown RBP13.13□□□□□ -0.31
SCFD1-220ENST00000556486 DCPSQ96C86 337 aaKnown RBP13.13□□□□□ -0.31
SCFD1-220ENST00000556486 VPS33BQ9H267 617 aa13.13□□□□□ -0.31
SCFD1-220ENST00000556486 HPS5Q9UPZ3 1129 aa13.13□□□□□ -0.31
SCFD1-220ENST00000556486 MAPK8IP3Q9UPT6 1336 aa13.13□□□□□ -0.31
SCFD1-220ENST00000556486 SLC10A3P09131 477 aa13.12□□□□□ -0.31
SCFD1-220ENST00000556486 AIMP1Q12904 312 aaKnown RBP13.12□□□□□ -0.31
SCFD1-220ENST00000556486 DDX46Q7L014 1031 aaKnown RBP13.12□□□□□ -0.31
SCFD1-220ENST00000556486 CCDC102AQ96A19 550 aa13.12□□□□□ -0.31
SCFD1-220ENST00000556486 GGA3Q9NZ52 723 aa13.12□□□□□ -0.31
SCFD1-220ENST00000556486 LRRC37AA6NMS7 1700 aa13.12□□□□□ -0.31
SCFD1-220ENST00000556486 DDX60Q8IY21 1712 aaKnown RBP13.11□□□□□ -0.31
SCFD1-220ENST00000556486 RTL9Q8NET4 1388 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 SCN9AQ15858 1988 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 BBOX1O75936 387 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 GRAPQ13588 217 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 RALBP1Q15311 655 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 PARP10Q53GL7 1025 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 SLC10A5Q5PT55 438 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 MOB2Q70IA6 237 aa13.11□□□□□ -0.31
SCFD1-220ENST00000556486 GRAPLQ8TC17 118 aaPredicted RBP13.11□□□□□ -0.31
SCFD1-220ENST00000556486 NSFL1CQ9UNZ2 370 aaKnown RBP13.11□□□□□ -0.31
SCFD1-220ENST00000556486 C6orf229H3BNL8 230 aa13.1□□□□□ -0.31
SCFD1-220ENST00000556486 ECE2O60344 883 aa13.1□□□□□ -0.31
SCFD1-220ENST00000556486 TBC1D8O95759 1140 aa13.1□□□□□ -0.31
SCFD1-220ENST00000556486 WASHC4Q2M389 1173 aa13.1□□□□□ -0.31
SCFD1-220ENST00000556486 KIF4BQ2VIQ3 1234 aa13.1□□□□□ -0.31
SCFD1-220ENST00000556486 CDCA5Q96FF9 252 aa13.1□□□□□ -0.31
SCFD1-220ENST00000556486 DDRGK1Q96HY6 314 aa13.1□□□□□ -0.31
SCFD1-220ENST00000556486 TRMT112Q9UI30 125 aaKnown RBP13.1□□□□□ -0.31
SCFD1-220ENST00000556486 G3V3G9 751 aa13.09□□□□□ -0.31
SCFD1-220ENST00000556486 GPSM2P81274 684 aa13.09□□□□□ -0.31
SCFD1-220ENST00000556486 RTL5Q5HYW3 569 aaPredicted RBP13.09□□□□□ -0.31
SCFD1-220ENST00000556486 NLRP10Q86W26 655 aa13.09□□□□□ -0.31
SCFD1-220ENST00000556486 RASAL3Q86YV0 1011 aa13.09□□□□□ -0.31
SCFD1-220ENST00000556486 CELF1Q92879 486 aaKnown RBP13.09□□□□□ -0.31
SCFD1-220ENST00000556486 POLLQ9UGP5 575 aa13.09□□□□□ -0.31
SCFD1-220ENST00000556486 TSPYL4Q9UJ04 414 aa13.09□□□□□ -0.31
SCFD1-220ENST00000556486 HDAC9Q9UKV0 1011 aa13.09□□□□□ -0.31
SCFD1-220ENST00000556486 TMPOP42166 694 aaKnown RBP13.08□□□□□ -0.32
SCFD1-220ENST00000556486 LMOD3Q0VAK6 560 aa13.08□□□□□ -0.32
SCFD1-220ENST00000556486 MAP2K5Q13163 448 aa13.08□□□□□ -0.32
SCFD1-220ENST00000556486 SULF1Q8IWU6 871 aa13.08□□□□□ -0.32
SCFD1-220ENST00000556486 XAGE3Q8WTP9 111 aa13.08□□□□□ -0.32
SCFD1-220ENST00000556486 ZNF296Q8WUU4 475 aaPredicted RBP13.08□□□□□ -0.32
SCFD1-220ENST00000556486 DPF2Q92785 391 aa13.08□□□□□ -0.32
SCFD1-220ENST00000556486 MKI67P46013 3256 aaKnown RBP13.08□□□□□ -0.32
SCFD1-220ENST00000556486 RIPK4P57078 832 aa13.07□□□□□ -0.32
SCFD1-220ENST00000556486 FOXK1P85037 733 aa13.07□□□□□ -0.32
SCFD1-220ENST00000556486 ANGEL2Q5VTE6 544 aaKnown RBP13.07□□□□□ -0.32
SCFD1-220ENST00000556486 PRAMEF18Q5VWM3 479 aa13.07□□□□□ -0.32
SCFD1-220ENST00000556486 COPS6Q7L5N1 327 aa13.07□□□□□ -0.32
SCFD1-220ENST00000556486 SH3TC1Q8TE82 1336 aa13.07□□□□□ -0.32
SCFD1-220ENST00000556486 SCARF1Q14162 830 aa13.06□□□□□ -0.32
SCFD1-220ENST00000556486 ARID3AQ99856 593 aa13.06□□□□□ -0.32
SCFD1-220ENST00000556486 PAPPA2Q9BXP8 1791 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 UBE2Q2LH0YL09 131 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 CHL1O00533 1208 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 IRF6O14896 467 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 AMHR2Q16671 573 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 HSP90AB3PQ58FF7 597 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 TMC2Q8TDI7 906 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms