RNA–Protein interactions for RNA: ENST00000554994.5

ATXN3-231, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-231	ENST00000554994	PDE4D	Q08499	809 aa		6.59	□□□□□ -1.35
ATXN3-231	ENST00000554994	FSTL1	Q12841	308 aa		6.59	□□□□□ -1.35
ATXN3-231	ENST00000554994	GRIN2C	Q14957	1233 aa		6.59	□□□□□ -1.35
ATXN3-231	ENST00000554994	NGDN	Q8NEJ9	315 aa	Known RBP	6.59	□□□□□ -1.35
ATXN3-231	ENST00000554994	HIRIP3	Q9BW71	556 aa	Predicted RBP	6.59	□□□□□ -1.35
ATXN3-231	ENST00000554994	OXCT2	Q9BYC2	517 aa	Predicted RBP	6.59	□□□□□ -1.35
ATXN3-231	ENST00000554994	DYRK1B	Q9Y463	629 aa		6.59	□□□□□ -1.35
ATXN3-231	ENST00000554994	YTHDC2	Q9H6S0	1430 aa	Known RBP	6.59	□□□□□ -1.36
ATXN3-231	ENST00000554994	SHISA8	B8ZZ34	492 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	COL8A1	P27658	744 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	NBPF1	Q3BBV0	1214 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	EPS8L1	Q8TE68	723 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	PRAM1	Q96QH2	718 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	NUCKS1	Q9H1E3	243 aa	Known RBP	6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	GPSM3	Q9Y4H4	160 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	BCL9	O00512	1426 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	ANKAR	Q7Z5J8	1434 aa		6.58	□□□□□ -1.36
ATXN3-231	ENST00000554994	BRD4	O60885	1362 aa	Predicted RBP	6.57	□□□□□ -1.36
ATXN3-231	ENST00000554994		A0A1W2PRU2	124 aa		6.57	□□□□□ -1.36
ATXN3-231	ENST00000554994	TOM1L2	Q6ZVM7	507 aa		6.57	□□□□□ -1.36
ATXN3-231	ENST00000554994	NLRP3	Q96P20	1036 aa		6.57	□□□□□ -1.36
ATXN3-231	ENST00000554994	RSPH6A	Q9H0K4	717 aa		6.57	□□□□□ -1.36
ATXN3-231	ENST00000554994	CD2AP	Q9Y5K6	639 aa		6.57	□□□□□ -1.36
ATXN3-231	ENST00000554994	NHS	Q6T4R5	1651 aa		6.57	□□□□□ -1.36
ATXN3-231	ENST00000554994	KCP	Q6ZWJ8	1503 aa		6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	WNK3	Q9BYP7	1800 aa		6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	AP1G2	O75843	785 aa		6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	AMPD1	P23109	780 aa		6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	PRDM10	Q9NQV6	1147 aa		6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	MKRN1	Q9UHC7	482 aa	Known RBP	6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	PIK3C2G	O75747	1445 aa		6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	QSER1	Q2KHR3	1735 aa		6.56	□□□□□ -1.36
ATXN3-231	ENST00000554994	BTAF1	O14981	1849 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	ESPN	B1AK53	854 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	MAP2K3	P46734	347 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	LBX1	P52954	281 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	NBPF10	Q6P3W6	841 aa	Known RBP	6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	C1orf229	Q6ZS94	237 aa	Predicted RBP	6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	COL23A1	Q86Y22	540 aa	Predicted RBP	6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	KRTAP1-3	Q8IUG1	177 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	NBPF15	Q8N660	670 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	PNMA1	Q8ND90	353 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	SMC1B	Q8NDV3	1235 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	SUV39H2	Q9H5I1	410 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	GPAM	Q9HCL2	828 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	TIMMDC1	Q9NPL8	285 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	USP6	P35125	1406 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	CPD	O75976	1380 aa		6.55	□□□□□ -1.36
ATXN3-231	ENST00000554994	CIC	Q96RK0	1608 aa	Predicted RBP	6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	GPC1	P35052	558 aa		6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	CTCF	P49711	727 aa	Predicted RBP	6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	PPP2R2D	Q66LE6	453 aa		6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	EDARADD	Q8WWZ3	215 aa		6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	CARD11	Q9BXL7	1154 aa		6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	PDE4DIP	Q5VU43	2346 aa		6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	TRPM1	Q7Z4N2	1603 aa		6.54	□□□□□ -1.36
ATXN3-231	ENST00000554994	QRICH2	Q9H0J4	1663 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	C1QTNF9B	B2RNN3	333 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	EXOC5	O00471	708 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	F11	P03951	625 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	RGS19	P49795	217 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	SRPK2	P78362	688 aa	Known RBP	6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	C9orf131	Q5VYM1	1079 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	ARHGAP27	Q6ZUM4	889 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	AIDA	Q96BJ3	306 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	SIRT1	Q96EB6	747 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	CDK19	Q9BWU1	502 aa		6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	ROCK2	O75116	1388 aa	Known RBP	6.53	□□□□□ -1.36
ATXN3-231	ENST00000554994	SMIM5	Q71RC9	77 aa		6.52	□□□□□ -1.37
ATXN3-231	ENST00000554994	ALYREF	Q86V81	257 aa	Known RBP	6.52	□□□□□ -1.37
ATXN3-231	ENST00000554994	HMX1	Q9NP08	348 aa	Predicted RBP	6.52	□□□□□ -1.37
ATXN3-231	ENST00000554994	BCS1L	Q9Y276	419 aa		6.52	□□□□□ -1.37
ATXN3-231	ENST00000554994	PCDHB9	Q9Y5E1	797 aa		6.52	□□□□□ -1.37
ATXN3-231	ENST00000554994	ITSN1	Q15811	1721 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	WASL	O00401	505 aa	Predicted RBP	6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	GC	P02774	474 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	CSB-PGBD3	P0DP91	1061 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	PHKA2	P46019	1235 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	TAS1R3	Q7RTX0	852 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	ABTB2	Q8N961	1025 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	PROCA1	Q8NCQ7	364 aa	Predicted RBP	6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	POLR3GL	Q9BT43	218 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	CDCA7	Q9BWT1	371 aa	Predicted RBP	6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	GRIP2	Q9C0E4	1043 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	SEMA6B	Q9H3T3	888 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	KAT6B	Q8WYB5	2073 aa		6.51	□□□□□ -1.37
ATXN3-231	ENST00000554994	WDR17	Q8IZU2	1322 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	KDM2B	Q8NHM5	1336 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	CENPJ	Q9HC77	1338 aa	Predicted RBP	6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	DOC2B	Q14184	412 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	CC2D2B	Q6DHV5	1058 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	CD163	Q86VB7	1156 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	NUDT16	Q96DE0	195 aa	Known RBP	6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	CFHR5	Q9BXR6	569 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	ARHGEF10L	Q9HCE6	1279 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	GDF2	Q9UK05	429 aa	Predicted RBP	6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	PHF24	Q9UPV7	400 aa		6.5	□□□□□ -1.37
ATXN3-231	ENST00000554994	PIK3C2A	O00443	1686 aa		6.49	□□□□□ -1.37
ATXN3-231	ENST00000554994	ADGRB1	O14514	1584 aa		6.49	□□□□□ -1.37
ATXN3-231	ENST00000554994	PLEKHG2	Q9H7P9	1386 aa		6.49	□□□□□ -1.37

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