RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 NF2P35240 595 aa18.45■□□□□ 0.54
PTCH1-217ENST00000548420 SLC10A4Q96EP9 437 aa18.45■□□□□ 0.54
PTCH1-217ENST00000548420 RSPH6AQ9H0K4 717 aa18.45■□□□□ 0.54
PTCH1-217ENST00000548420 ZBTB48P10074 688 aaPredicted RBP18.44■□□□□ 0.54
PTCH1-217ENST00000548420 TMC4Q7Z404 712 aa18.44■□□□□ 0.54
PTCH1-217ENST00000548420 NECTIN2Q92692 538 aa18.44■□□□□ 0.54
PTCH1-217ENST00000548420 HTATIP2Q9BUP3 242 aa18.44■□□□□ 0.54
PTCH1-217ENST00000548420 MIS18AQ9NYP9 233 aa18.44■□□□□ 0.54
PTCH1-217ENST00000548420 DCTN1Q14203 1278 aa18.43■□□□□ 0.54
PTCH1-217ENST00000548420 ARHGAP39Q9C0H5 1083 aa18.43■□□□□ 0.54
PTCH1-217ENST00000548420 EYSQ5T1H1 3165 aa18.43■□□□□ 0.54
PTCH1-217ENST00000548420 WNT10BO00744 389 aa18.42■□□□□ 0.54
PTCH1-217ENST00000548420 EYA3Q99504 573 aa18.42■□□□□ 0.54
PTCH1-217ENST00000548420 TESPA1A2RU30 521 aaPredicted RBP18.41■□□□□ 0.54
PTCH1-217ENST00000548420 U2AF1L5P0DN76 240 aaPredicted RBP18.41■□□□□ 0.54
PTCH1-217ENST00000548420 U2AF1Q01081 240 aaKnown RBP eCLIP18.41■□□□□ 0.54
PTCH1-217ENST00000548420 SSC5DA1L4H1 1573 aa18.4■□□□□ 0.54
PTCH1-217ENST00000548420 PRKAR2BP31323 418 aa18.4■□□□□ 0.54
PTCH1-217ENST00000548420 MAP3K11Q16584 847 aa18.4■□□□□ 0.54
PTCH1-217ENST00000548420 LRP10Q7Z4F1 713 aa18.4■□□□□ 0.54
PTCH1-217ENST00000548420 ZNF428Q96B54 188 aa18.4■□□□□ 0.54
PTCH1-217ENST00000548420 GDF15Q99988 308 aa18.4■□□□□ 0.54
PTCH1-217ENST00000548420 MXD3Q9BW11 206 aa18.4■□□□□ 0.54
PTCH1-217ENST00000548420 ZC3H12CQ9C0D7 883 aaKnown RBP18.4■□□□□ 0.54
PTCH1-217ENST00000548420 GJA8P48165 433 aa18.39■□□□□ 0.53
PTCH1-217ENST00000548420 NLRP10Q86W26 655 aa18.39■□□□□ 0.53
PTCH1-217ENST00000548420 PRUNE2Q8WUY3 3088 aa18.39■□□□□ 0.53
PTCH1-217ENST00000548420 ALPK3Q96L96 1907 aa18.39■□□□□ 0.53
PTCH1-217ENST00000548420 SASH1O94885 1247 aa18.38■□□□□ 0.53
PTCH1-217ENST00000548420 OTUD7BQ6GQQ9 843 aa18.38■□□□□ 0.53
PTCH1-217ENST00000548420 THUMPD2Q9BTF0 503 aaKnown RBP18.38■□□□□ 0.53
PTCH1-217ENST00000548420 MYBBP1AQ9BQG0 1328 aaKnown RBP18.38■□□□□ 0.53
PTCH1-217ENST00000548420 ZNF316A6NFI3 1004 aaPredicted RBP18.37■□□□□ 0.53
PTCH1-217ENST00000548420 BMP8BP34820 402 aa18.37■□□□□ 0.53
PTCH1-217ENST00000548420 BCAMP50895 628 aa18.37■□□□□ 0.53
PTCH1-217ENST00000548420 PRKRIP1Q9H875 184 aaPredicted RBP18.37■□□□□ 0.53
PTCH1-217ENST00000548420 MUC3AQ02505 3323 aa18.36■□□□□ 0.53
PTCH1-217ENST00000548420 LRIT3Q3SXY7 679 aa18.36■□□□□ 0.53
PTCH1-217ENST00000548420 MS4A4AQ96JQ5 239 aa18.36■□□□□ 0.53
PTCH1-217ENST00000548420 GUCD1Q96NT3 240 aa18.36■□□□□ 0.53
PTCH1-217ENST00000548420 EVI5O60447 810 aa18.35■□□□□ 0.53
PTCH1-217ENST00000548420 GJB1P08034 283 aa18.35■□□□□ 0.53
PTCH1-217ENST00000548420 PLA2G5P39877 138 aa18.35■□□□□ 0.53
PTCH1-217ENST00000548420 PLEKHF1Q96S99 279 aa18.35■□□□□ 0.53
PTCH1-217ENST00000548420 PODXL2Q9NZ53 605 aa18.35■□□□□ 0.53
PTCH1-217ENST00000548420 TRMT112Q9UI30 125 aaKnown RBP18.35■□□□□ 0.53
PTCH1-217ENST00000548420 RPTORQ8N122 1335 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 SH3TC1Q8TE82 1336 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 USP17L3A6NCW0 530 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 USP17L4A6NCW7 530 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 ARHGEF6Q15052 776 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 PDIA6Q15084 440 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 TAF7Q15545 349 aaPredicted RBP18.34■□□□□ 0.53
PTCH1-217ENST00000548420 USP17L1Q7RTZ2 530 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 NKX2-3Q8TAU0 364 aa18.34■□□□□ 0.53
PTCH1-217ENST00000548420 G3V3G9 751 aa18.33■□□□□ 0.52
PTCH1-217ENST00000548420 UFL1O94874 794 aa18.33■□□□□ 0.52
PTCH1-217ENST00000548420 FARP2O94887 1054 aaPredicted RBP18.33■□□□□ 0.52
PTCH1-217ENST00000548420 CCL5P13501 91 aa18.33■□□□□ 0.52
PTCH1-217ENST00000548420 CTGFP29279 349 aa18.33■□□□□ 0.52
PTCH1-217ENST00000548420 SF3B3Q15393 1217 aaKnown RBP18.33■□□□□ 0.52
PTCH1-217ENST00000548420 DCAF8Q5TAQ9 597 aa18.33■□□□□ 0.52
PTCH1-217ENST00000548420 BRI3BPQ8WY22 251 aa18.33■□□□□ 0.52
PTCH1-217ENST00000548420 EIF4A1P60842 406 aaKnown RBP18.32■□□□□ 0.52
PTCH1-217ENST00000548420 TAF1CQ15572 869 aaPredicted RBP18.32■□□□□ 0.52
PTCH1-217ENST00000548420 ZBED3Q96IU2 234 aaPredicted RBP18.32■□□□□ 0.52
PTCH1-217ENST00000548420 HTATSF1O43719 755 aaKnown RBP18.31■□□□□ 0.52
PTCH1-217ENST00000548420 ECM2O94769 699 aaPredicted RBP18.31■□□□□ 0.52
PTCH1-217ENST00000548420 ANXA1P04083 346 aa18.31■□□□□ 0.52
PTCH1-217ENST00000548420 LACTBP83111 547 aaPredicted RBP18.31■□□□□ 0.52
PTCH1-217ENST00000548420 PROSER3Q2NL68 480 aa18.31■□□□□ 0.52
PTCH1-217ENST00000548420 DACT2Q5SW24 774 aa18.31■□□□□ 0.52
PTCH1-217ENST00000548420 APOBEC3FQ8IUX4 373 aaKnown RBP18.31■□□□□ 0.52
PTCH1-217ENST00000548420 FAM43AQ8N2R8 423 aa18.31■□□□□ 0.52
PTCH1-217ENST00000548420 ZFYVE28Q9HCC9 887 aa18.31■□□□□ 0.52
PTCH1-217ENST00000548420 HOXD11P31277 338 aaPredicted RBP18.3■□□□□ 0.52
PTCH1-217ENST00000548420 RPS8P62241 208 aaKnown RBP18.3■□□□□ 0.52
PTCH1-217ENST00000548420 RTF1Q92541 710 aaKnown RBP18.3■□□□□ 0.52
PTCH1-217ENST00000548420 DEFB129Q9H1M3 183 aa18.3■□□□□ 0.52
PTCH1-217ENST00000548420 PNNQ9H307 717 aaKnown RBP18.3■□□□□ 0.52
PTCH1-217ENST00000548420 USP2O75604 605 aaPredicted RBP18.29■□□□□ 0.52
PTCH1-217ENST00000548420 U2AF1L4Q8WU68 220 aaKnown RBP18.29■□□□□ 0.52
PTCH1-217ENST00000548420 CNKSR2Q8WXI2 1034 aa18.29■□□□□ 0.52
PTCH1-217ENST00000548420 RNF208Q9H0X6 261 aa18.29■□□□□ 0.52
PTCH1-217ENST00000548420 GGA1Q9UJY5 639 aa18.29■□□□□ 0.52
PTCH1-217ENST00000548420 LAMA2P24043 3122 aaKnown RBP18.28■□□□□ 0.52
PTCH1-217ENST00000548420 OTOFQ9HC10 1997 aa18.28■□□□□ 0.52
PTCH1-217ENST00000548420 UNCXA6NJT0 531 aa18.27■□□□□ 0.52
PTCH1-217ENST00000548420 PODNQ7Z5L7 613 aa18.27■□□□□ 0.52
PTCH1-217ENST00000548420 ZMYND8Q9ULU4 1186 aaPredicted RBP18.27■□□□□ 0.52
PTCH1-217ENST00000548420 POTEB2H3BUK9 544 aa18.26■□□□□ 0.51
PTCH1-217ENST00000548420 PPP1R12BO60237 982 aaPredicted RBP18.26■□□□□ 0.51
PTCH1-217ENST00000548420 GRK4P32298 578 aa18.26■□□□□ 0.51
PTCH1-217ENST00000548420 PRMT2P55345 433 aa18.26■□□□□ 0.51
PTCH1-217ENST00000548420 NFE2L2Q16236 605 aa18.26■□□□□ 0.51
PTCH1-217ENST00000548420 NBPF12Q5TAG4 269 aaPredicted RBP18.26■□□□□ 0.51
PTCH1-217ENST00000548420 TDHQ8IZJ6 230 aa18.26■□□□□ 0.51
PTCH1-217ENST00000548420 OGFOD1Q8N543 542 aa18.26■□□□□ 0.51
PTCH1-217ENST00000548420 OPTNQ96CV9 577 aa18.26■□□□□ 0.51
PTCH1-217ENST00000548420 FAM122AQ96E09 287 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms