RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 AFDNP55196 1824 aaKnown RBP10.73□□□□□ -0.69
VPS29-203ENST00000546588 AXIN1O15169 862 aa10.73□□□□□ -0.69
VPS29-203ENST00000546588 TRIM27P14373 513 aa10.73□□□□□ -0.69
VPS29-203ENST00000546588 CDK11BP21127 795 aaKnown RBP10.73□□□□□ -0.69
VPS29-203ENST00000546588 BRD2P25440 801 aaKnown RBP10.73□□□□□ -0.69
VPS29-203ENST00000546588 IRF5Q13568 498 aa10.73□□□□□ -0.69
VPS29-203ENST00000546588 C20orf194Q5TEA3 1177 aa10.73□□□□□ -0.69
VPS29-203ENST00000546588 ZNF790Q6PG37 636 aa10.73□□□□□ -0.69
VPS29-203ENST00000546588 ATF7IPQ6VMQ6 1270 aa10.73□□□□□ -0.69
VPS29-203ENST00000546588 SMC4Q9NTJ3 1288 aa10.73□□□□□ -0.69
VPS29-203ENST00000546588 BCORQ6W2J9 1755 aa10.72□□□□□ -0.69
VPS29-203ENST00000546588 BTBD11A6QL63 1104 aa10.72□□□□□ -0.69
VPS29-203ENST00000546588 IPO8O15397 1037 aaKnown RBP10.72□□□□□ -0.69
VPS29-203ENST00000546588 GIGYF1O75420 1035 aaPredicted RBP10.72□□□□□ -0.69
VPS29-203ENST00000546588 ADAMTS2O95450 1211 aa10.72□□□□□ -0.69
VPS29-203ENST00000546588 MMP16P51512 607 aa10.72□□□□□ -0.69
VPS29-203ENST00000546588 VAC14Q08AM6 782 aa10.72□□□□□ -0.69
VPS29-203ENST00000546588 LRRN4Q8WUT4 740 aa10.72□□□□□ -0.69
VPS29-203ENST00000546588 LAS1LQ9Y4W2 734 aaKnown RBP10.72□□□□□ -0.69
VPS29-203ENST00000546588 ATP10DQ9P241 1426 aa10.72□□□□□ -0.69
VPS29-203ENST00000546588 WNT7AO00755 349 aa10.71□□□□□ -0.69
VPS29-203ENST00000546588 PLIN1O60240 522 aa10.71□□□□□ -0.69
VPS29-203ENST00000546588 ERBB4Q15303 1308 aa10.71□□□□□ -0.69
VPS29-203ENST00000546588 KRT24Q2M2I5 525 aa10.71□□□□□ -0.69
VPS29-203ENST00000546588 WASHC4Q2M389 1173 aa10.71□□□□□ -0.69
VPS29-203ENST00000546588 HMGB1P09429 215 aaKnown RBP10.7□□□□□ -0.7
VPS29-203ENST00000546588 RLBP1P12271 317 aa10.7□□□□□ -0.7
VPS29-203ENST00000546588 MVPQ14764 893 aaKnown RBP10.7□□□□□ -0.7
VPS29-203ENST00000546588 GRIPAP1Q4V328 841 aa10.7□□□□□ -0.7
VPS29-203ENST00000546588 CCDC30Q5VVM6 783 aa10.7□□□□□ -0.7
VPS29-203ENST00000546588 DZIP1LQ8IYY4 767 aaKnown RBP10.7□□□□□ -0.7
VPS29-203ENST00000546588 CFAP99D6REC4 459 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 SMPD1P17405 629 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 NFATC2IPQ8NCF5 419 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 EXOC6Q8TAG9 804 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 CRBNQ96SW2 442 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 TRIM34Q9BYJ4 488 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 API5Q9BZZ5 524 aaKnown RBP10.69□□□□□ -0.7
VPS29-203ENST00000546588 MIS18AQ9NYP9 233 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 NOB1Q9ULX3 412 aaKnown RBP10.69□□□□□ -0.7
VPS29-203ENST00000546588 NUP98P52948 1817 aa10.69□□□□□ -0.7
VPS29-203ENST00000546588 MYH14Q7Z406 1995 aaKnown RBP10.68□□□□□ -0.7
VPS29-203ENST00000546588 KDM2BQ8NHM5 1336 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 TNS1Q9HBL0 1735 aaKnown RBP10.68□□□□□ -0.7
VPS29-203ENST00000546588 EXOC5O00471 708 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 ZBTB24O43167 697 aaPredicted RBP10.68□□□□□ -0.7
VPS29-203ENST00000546588 KCNQ3O43525 872 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 IRX6P78412 446 aaPredicted RBP10.68□□□□□ -0.7
VPS29-203ENST00000546588 NFX1Q12986 1120 aaKnown RBP10.68□□□□□ -0.7
VPS29-203ENST00000546588 TRIM32Q13049 653 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 INTS3Q68E01 1043 aaKnown RBP10.68□□□□□ -0.7
VPS29-203ENST00000546588 LRP10Q7Z4F1 713 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 ADAMTS19Q8TE59 1207 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 C8orf37Q96NL8 207 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 BCL2L13Q9BXK5 485 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 USP21Q9UK80 565 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 DDX19BQ9UMR2 479 aa10.68□□□□□ -0.7
VPS29-203ENST00000546588 LAMB2P55268 1798 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 SCN7AQ01118 1682 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 AFF2P51816 1311 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.67□□□□□ -0.7
VPS29-203ENST00000546588 CABP4P57796 275 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 DDB1Q16531 1140 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 SNIP1Q8TAD8 396 aaKnown RBP10.67□□□□□ -0.7
VPS29-203ENST00000546588 SYMPKQ92797 1274 aaKnown RBP10.67□□□□□ -0.7
VPS29-203ENST00000546588 PBXIP1Q96AQ6 731 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 ZNF496Q96IT1 587 aaPredicted RBP10.67□□□□□ -0.7
VPS29-203ENST00000546588 NGLY1Q96IV0 654 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 FMNL2Q96PY5 1086 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 CASZ1Q86V15 1759 aa10.67□□□□□ -0.7
VPS29-203ENST00000546588 TTC24A2A3L6 582 aaPredicted RBP10.66□□□□□ -0.7
VPS29-203ENST00000546588 WFS1O76024 890 aa10.66□□□□□ -0.7
VPS29-203ENST00000546588 Q3C1V9 767 aa10.66□□□□□ -0.7
VPS29-203ENST00000546588 EPS8L1Q8TE68 723 aa10.66□□□□□ -0.7
VPS29-203ENST00000546588 STK31Q9BXU1 1019 aa10.66□□□□□ -0.7
VPS29-203ENST00000546588 CHMP4BQ9H444 224 aaKnown RBP10.66□□□□□ -0.7
VPS29-203ENST00000546588 DBF4Q9UBU7 674 aaPredicted RBP10.66□□□□□ -0.7
VPS29-203ENST00000546588 TRPC5Q9UL62 973 aaPredicted RBP10.66□□□□□ -0.7
VPS29-203ENST00000546588 TNNQ9UQP3 1299 aa10.66□□□□□ -0.7
VPS29-203ENST00000546588 MYH3P11055 1940 aa10.66□□□□□ -0.7
VPS29-203ENST00000546588 TUBGCP6Q96RT7 1819 aa10.65□□□□□ -0.7
VPS29-203ENST00000546588 ELL2O00472 640 aaPredicted RBP10.65□□□□□ -0.7
VPS29-203ENST00000546588 DXOO77932 396 aaKnown RBP10.65□□□□□ -0.7
VPS29-203ENST00000546588 SNRPA1P09661 255 aaKnown RBP10.65□□□□□ -0.7
VPS29-203ENST00000546588 MARCH10Q8NA82 808 aaPredicted RBP10.65□□□□□ -0.7
VPS29-203ENST00000546588 PANK1Q8TE04 598 aa10.65□□□□□ -0.7
VPS29-203ENST00000546588 FRAT1Q92837 279 aaPredicted RBP10.65□□□□□ -0.7
VPS29-203ENST00000546588 DDX21Q9NR30 783 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS29-203ENST00000546588 ZBTB40Q9NUA8 1239 aa10.65□□□□□ -0.7
VPS29-203ENST00000546588 USP35Q9P2H5 1018 aa10.65□□□□□ -0.7
VPS29-203ENST00000546588 ADCY9O60503 1353 aa10.65□□□□□ -0.71
VPS29-203ENST00000546588 C4AP0C0L4 1744 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 C4BP0C0L5 1744 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 ZBTB7BO15156 539 aaPredicted RBP10.64□□□□□ -0.71
VPS29-203ENST00000546588 CANXP27824 592 aaKnown RBP10.64□□□□□ -0.71
VPS29-203ENST00000546588 FTSJ3Q8IY81 847 aaKnown RBP10.64□□□□□ -0.71
VPS29-203ENST00000546588 TTC5Q8N0Z6 440 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 TMEM57Q8N5G2 664 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 PIGBQ92521 554 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 MRGPRX2Q96LB1 330 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms