RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 LMBR1Q8WVP7 490 aa17.49■□□□□ 0.39
CHD4-210ENST00000544040 MRRFQ96E11 262 aaKnown RBP17.49■□□□□ 0.39
CHD4-210ENST00000544040 F8W031 263 aaPredicted RBP17.49■□□□□ 0.39
CHD4-210ENST00000544040 CFAP157Q5JU67 520 aa17.49■□□□□ 0.39
CHD4-210ENST00000544040 GBP6Q6ZN66 633 aa17.49■□□□□ 0.39
CHD4-210ENST00000544040 U2AF2P26368 475 aaKnown RBP eCLIP17.49■□□□□ 0.392e-8■□□□□ 10.4
CHD4-210ENST00000544040 HPDP32754 393 aaPredicted RBP17.49■□□□□ 0.39
CHD4-210ENST00000544040 GTPBP4Q9BZE4 634 aaKnown RBP17.49■□□□□ 0.39
CHD4-210ENST00000544040 ERICH3Q5RHP9 1530 aa17.49■□□□□ 0.39
CHD4-210ENST00000544040 NAPAP54920 295 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 SETDB1Q15047 1291 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 RSRC1Q96IZ7 334 aaKnown RBP17.48■□□□□ 0.39
CHD4-210ENST00000544040 FAM13AO94988 1023 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 ADAMTS2O95450 1211 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 SMC1BQ8NDV3 1235 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 NEK11Q8NG66 645 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 ATAD2BQ9ULI0 1458 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 CYP7A1P22680 504 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 RHPN1Q8TCX5 695 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 KRT23Q9C075 422 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 WDHD1O75717 1129 aaPredicted RBP17.48■□□□□ 0.39
CHD4-210ENST00000544040 SPAG1Q07617 926 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 SLC52A1Q9NWF4 448 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 PICALMQ13492 652 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 PLEKHH2Q8IVE3 1493 aa17.48■□□□□ 0.39
CHD4-210ENST00000544040 HGSO14964 777 aaPredicted RBP17.47■□□□□ 0.39
CHD4-210ENST00000544040 STIM2Q9P246 746 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 VIMP08670 466 aaKnown RBP17.47■□□□□ 0.39
CHD4-210ENST00000544040 C16orf71Q8IYS4 520 aaPredicted RBP17.47■□□□□ 0.39
CHD4-210ENST00000544040 ODF2LQ9ULJ1 636 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 ATP6V0A2Q9Y487 856 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 MCM7P33993 719 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 TXNDC16Q9P2K2 825 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 LDHCP07864 332 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 SEPT14Q6ZU15 432 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 CDC5LQ99459 802 aaKnown RBP17.47■□□□□ 0.39
CHD4-210ENST00000544040 TRIM7Q9C029 511 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.47■□□□□ 0.39
CHD4-210ENST00000544040 SPTLC2O15270 562 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 ESYT1Q9BSJ8 1104 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 ZBTB21Q9ULJ3 1066 aa17.47■□□□□ 0.39
CHD4-210ENST00000544040 NAIPQ13075 1403 aa17.46■□□□□ 0.39
CHD4-210ENST00000544040 ERCC5P28715 1186 aaPredicted RBP17.46■□□□□ 0.39
CHD4-210ENST00000544040 USP37Q86T82 979 aa17.46■□□□□ 0.39
CHD4-210ENST00000544040 TCHPQ9BT92 498 aa17.46■□□□□ 0.39
CHD4-210ENST00000544040 SH3BP5O60239 455 aa17.46■□□□□ 0.39
CHD4-210ENST00000544040 RNASE9P60153 205 aaKnown RBP17.46■□□□□ 0.39
CHD4-210ENST00000544040 IRX5P78411 483 aaPredicted RBP17.46■□□□□ 0.39
CHD4-210ENST00000544040 RAPGEF1Q13905 1077 aa17.46■□□□□ 0.38
CHD4-210ENST00000544040 STMN2Q93045 179 aa17.46■□□□□ 0.38
CHD4-210ENST00000544040 ECM2O94769 699 aaPredicted RBP17.45■□□□□ 0.38
CHD4-210ENST00000544040 VAV2P52735 878 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 CEP85LQ5SZL2 805 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 INTS8Q75QN2 995 aaKnown RBP17.45■□□□□ 0.38
CHD4-210ENST00000544040 FAM169AQ9Y6X4 670 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 LACTBP83111 547 aaPredicted RBP17.45■□□□□ 0.38
CHD4-210ENST00000544040 ZNF622Q969S3 477 aaKnown RBP eCLIP17.45■□□□□ 0.383e-9■■■□□ 16.2
CHD4-210ENST00000544040 RXRAP19793 462 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 HDXQ7Z353 690 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 MEIS3Q99687 375 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 RAPGEF3O95398 923 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 WDR66Q8TBY9 1149 aa17.45■□□□□ 0.38
CHD4-210ENST00000544040 MAP3K9P80192 1104 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 SF3A3Q12874 501 aaKnown RBP eCLIP17.44■□□□□ 0.384e-6■■■■□ 22.2
CHD4-210ENST00000544040 IMPG2Q9BZV3 1241 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 RASSF4Q9H2L5 321 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 APOBRQ0VD83 1088 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 ESR2Q92731 530 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 CCT6AP40227 531 aaKnown RBP17.44■□□□□ 0.38
CHD4-210ENST00000544040 NMIQ13287 307 aaPredicted RBP17.44■□□□□ 0.38
CHD4-210ENST00000544040 DCAF17Q5H9S7 520 aaPredicted RBP17.44■□□□□ 0.38
CHD4-210ENST00000544040 OGFRQ9NZT2 677 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 MTRF1LQ9UGC7 380 aaKnown RBP17.44■□□□□ 0.38
CHD4-210ENST00000544040 CIB2O75838 187 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 BMP15O95972 392 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 MCMDC2Q4G0Z9 681 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 SMARCC2Q8TAQ2 1214 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 MIPOL1Q8TD10 442 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 PIK3R4Q99570 1358 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 PPP2R3AQ06190 1150 aa17.44■□□□□ 0.38
CHD4-210ENST00000544040 PRG4Q92954 1404 aaPredicted RBP17.43■□□□□ 0.38
CHD4-210ENST00000544040 PPP1R21Q6ZMI0 780 aa17.43■□□□□ 0.38
CHD4-210ENST00000544040 CCDC65Q8IXS2 484 aa17.43■□□□□ 0.38
CHD4-210ENST00000544040 PPFIBP2Q8ND30 876 aa17.43■□□□□ 0.38
CHD4-210ENST00000544040 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.43■□□□□ 0.38
CHD4-210ENST00000544040 RASA3Q14644 834 aa17.43■□□□□ 0.38
CHD4-210ENST00000544040 PDE1AP54750 535 aa17.43■□□□□ 0.38
CHD4-210ENST00000544040 EVCP57679 992 aa17.43■□□□□ 0.38
CHD4-210ENST00000544040 CCDC122Q5T0U0 273 aa17.43■□□□□ 0.38
CHD4-210ENST00000544040 ATP2A2P16615 1042 aaKnown RBP17.42■□□□□ 0.38
CHD4-210ENST00000544040 KRT2P35908 639 aa17.42■□□□□ 0.38
CHD4-210ENST00000544040 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.42■□□□□ 0.382e-6■■■■□ 24.8
CHD4-210ENST00000544040 ARAP1Q96P48 1450 aa17.42■□□□□ 0.38
CHD4-210ENST00000544040 ATP11AP98196 1134 aa17.42■□□□□ 0.38
CHD4-210ENST00000544040 ZGPATQ8N5A5 531 aaKnown RBP17.42■□□□□ 0.38
CHD4-210ENST00000544040 TRIM75PA6NK02 468 aa17.42■□□□□ 0.38
CHD4-210ENST00000544040 CTNND2Q9UQB3 1225 aa17.42■□□□□ 0.38
CHD4-210ENST00000544040 UQCRFS1P1P0C7P4 283 aa17.42■□□□□ 0.38
CHD4-210ENST00000544040 TNNC1P63316 161 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms