RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 FOXD4L4Q8WXT5 416 aaPredicted RBP16.91■□□□□ 0.3
LDB3-207ENST00000542786 TCEANC2Q96MN5 208 aa16.91■□□□□ 0.3
LDB3-207ENST00000542786 SEC31BQ9NQW1 1179 aa16.91■□□□□ 0.3
LDB3-207ENST00000542786 USP21Q9UK80 565 aa16.91■□□□□ 0.3
LDB3-207ENST00000542786 A0A0G2JLW4 131 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 ANKRD1Q15327 319 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 PUM3Q15397 648 aaKnown RBP16.9■□□□□ 0.3
LDB3-207ENST00000542786 NEK1Q96PY6 1258 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 BCL2L12Q9HB09 334 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 COL24A1Q17RW2 1714 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 SYT1P21579 422 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 PHKA1P46020 1223 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 RC3H1Q5TC82 1133 aaKnown RBP16.9■□□□□ 0.3
LDB3-207ENST00000542786 NECAB1Q8N987 351 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 SMC3Q9UQE7 1217 aa16.9■□□□□ 0.3
LDB3-207ENST00000542786 LY75O60449 1722 aa16.89■□□□□ 0.29
LDB3-207ENST00000542786 KCNQ4P56696 695 aa16.89■□□□□ 0.29
LDB3-207ENST00000542786 GPT2Q8TD30 523 aa16.89■□□□□ 0.29
LDB3-207ENST00000542786 LPIN2Q92539 896 aa16.89■□□□□ 0.29
LDB3-207ENST00000542786 APPBP2Q92624 585 aa16.89■□□□□ 0.29
LDB3-207ENST00000542786 ZNF652Q9Y2D9 606 aa16.89■□□□□ 0.29
LDB3-207ENST00000542786 CASZ1Q86V15 1759 aa16.89■□□□□ 0.29
LDB3-207ENST00000542786 GOLGA6L3A6NEY3 463 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 FAM177BA6PVY3 158 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 PRPF40AO75400 957 aaKnown RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 ZSCAN22P10073 491 aaPredicted RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 LRRFIP1Q32MZ4 808 aaKnown RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 CCDC152Q4G0S7 254 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 L1TD1Q5T7N2 865 aaKnown RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 CCDC102BQ68D86 513 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 GAS2L3Q86XJ1 694 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 PIH1D3Q9NQM4 214 aaKnown RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 ISY1Q9ULR0 285 aaKnown RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 DDX49Q9Y6V7 483 aaKnown RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 A0A1B0GUL6 1792 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 STX6O43752 255 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 GJB2P29033 226 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 HELBQ8NG08 1087 aaPredicted RBP16.88■□□□□ 0.29
LDB3-207ENST00000542786 MTMR6Q9Y217 621 aa16.88■□□□□ 0.29
LDB3-207ENST00000542786 DOCK2Q92608 1830 aa16.87■□□□□ 0.29
LDB3-207ENST00000542786 XRCC6P12956 609 aaKnown RBP eCLIP16.87■□□□□ 0.29
LDB3-207ENST00000542786 EXOSC10Q01780 885 aaKnown RBP16.87■□□□□ 0.29
LDB3-207ENST00000542786 C3orf67Q6ZVT6 689 aa16.87■□□□□ 0.29
LDB3-207ENST00000542786 AGXT2Q9BYV1 514 aa16.87■□□□□ 0.29
LDB3-207ENST00000542786 SBF2Q86WG5 1849 aa16.87■□□□□ 0.29
LDB3-207ENST00000542786 UQCRFS1P1P0C7P4 283 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 HSP90B1P14625 803 aaKnown RBP16.86■□□□□ 0.29
LDB3-207ENST00000542786 ADD2P35612 726 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 TMEM87AQ8NBN3 555 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 PUS7LQ9H0K6 701 aaKnown RBP16.86■□□□□ 0.29
LDB3-207ENST00000542786 BRPF3Q9ULD4 1205 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 MYO5AQ9Y4I1 1855 aaKnown RBP16.86■□□□□ 0.29
LDB3-207ENST00000542786 TAF1LQ8IZX4 1826 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 ONECUT3O60422 494 aaPredicted RBP16.86■□□□□ 0.29
LDB3-207ENST00000542786 DTNBO60941 627 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 RPS6KA4O75676 772 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 SF3B3Q15393 1217 aaKnown RBP16.86■□□□□ 0.29
LDB3-207ENST00000542786 ERFEQ4G0M1 354 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 TTLL5Q6EMB2 1281 aa16.86■□□□□ 0.29
LDB3-207ENST00000542786 TCRBV5S4A2TA0A5A2 114 aa16.85■□□□□ 0.29
LDB3-207ENST00000542786 E7EWF7 191 aa16.85■□□□□ 0.29
LDB3-207ENST00000542786 SNAP23O00161 211 aa16.85■□□□□ 0.29
LDB3-207ENST00000542786 F13A1P00488 732 aa16.85■□□□□ 0.29
LDB3-207ENST00000542786 SLC10A5Q5PT55 438 aa16.85■□□□□ 0.29
LDB3-207ENST00000542786 SMIM5Q71RC9 77 aa16.85■□□□□ 0.29
LDB3-207ENST00000542786 NSFL1CQ9UNZ2 370 aaKnown RBP16.85■□□□□ 0.29
LDB3-207ENST00000542786 HMGB1P09429 215 aaKnown RBP16.84■□□□□ 0.29
LDB3-207ENST00000542786 SLC5A1P13866 664 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 ZNF445P59923 1031 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 TTF1Q15361 905 aaPredicted RBP16.84■□□□□ 0.29
LDB3-207ENST00000542786 UBE3CQ15386 1083 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 Q6ZUG5 572 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 DHX32Q7L7V1 743 aaKnown RBP16.84■□□□□ 0.29
LDB3-207ENST00000542786 AMIGO3Q86WK7 504 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 GTF3C6Q969F1 213 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 GJD4Q96KN9 370 aaPredicted RBP16.84■□□□□ 0.29
LDB3-207ENST00000542786 NARFQ9UHQ1 456 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 RASGRF1Q13972 1273 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 WASHC4Q2M389 1173 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 TBC1D9BQ66K14 1250 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 FBXL16Q8N461 479 aa16.84■□□□□ 0.29
LDB3-207ENST00000542786 GPAA1O43292 621 aa16.83■□□□□ 0.28
LDB3-207ENST00000542786 PDE6AP16499 860 aa16.83■□□□□ 0.28
LDB3-207ENST00000542786 FAM182BQ5T319 152 aa16.83■□□□□ 0.28
LDB3-207ENST00000542786 MPHOSPH8Q99549 860 aa16.83■□□□□ 0.28
LDB3-207ENST00000542786 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.83■□□□□ 0.28
LDB3-207ENST00000542786 IGHMBP2P38935 993 aaKnown RBP16.82■□□□□ 0.28
LDB3-207ENST00000542786 SRP68Q9UHB9 627 aaKnown RBP16.82■□□□□ 0.28
LDB3-207ENST00000542786 WWC3Q9ULE0 1092 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 C4AP0C0L4 1744 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 C4BP0C0L5 1744 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 AFF2P51816 1311 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 PFKFB2O60825 505 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 FGAP02671 866 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 HSPA1LP34931 641 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 MRE11P49959 708 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 CHRNDQ07001 517 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 ZSCAN25Q6NSZ9 544 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 CAVIN1Q6NZI2 390 aaKnown RBP16.82■□□□□ 0.28
LDB3-207ENST00000542786 SPATA5Q8NB90 893 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms