RNA–Protein interactions for RNA: ENST00000541817.5

CHFR-220, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-220ENST00000541817 EIF2S2P20042 333 aaKnown RBP12.93□□□□□ -0.34
CHFR-220ENST00000541817 LRP10Q7Z4F1 713 aa12.93□□□□□ -0.34
CHFR-220ENST00000541817 DEFB123Q8N688 67 aa12.93□□□□□ -0.34
CHFR-220ENST00000541817 FBXW7Q969H0 707 aa12.93□□□□□ -0.34
CHFR-220ENST00000541817 ARHGAP39Q9C0H5 1083 aa12.93□□□□□ -0.34
CHFR-220ENST00000541817 STAP2Q9UGK3 403 aa12.93□□□□□ -0.34
CHFR-220ENST00000541817 UNC80Q8N2C7 3258 aa12.93□□□□□ -0.34
CHFR-220ENST00000541817 ZBTB7BO15156 539 aaPredicted RBP12.92□□□□□ -0.34
CHFR-220ENST00000541817 PDIA6Q15084 440 aa12.92□□□□□ -0.34
CHFR-220ENST00000541817 NECTIN2Q92692 538 aa12.92□□□□□ -0.34
CHFR-220ENST00000541817 ANKIB1Q9P2G1 1089 aa12.92□□□□□ -0.34
CHFR-220ENST00000541817 USP17L3A6NCW0 530 aa12.91□□□□□ -0.34
CHFR-220ENST00000541817 USP17L4A6NCW7 530 aa12.91□□□□□ -0.34
CHFR-220ENST00000541817 USP17L1Q7RTZ2 530 aa12.91□□□□□ -0.34
CHFR-220ENST00000541817 FAM89AQ96GI7 184 aa12.91□□□□□ -0.34
CHFR-220ENST00000541817 SEC31BQ9NQW1 1179 aa12.91□□□□□ -0.34
CHFR-220ENST00000541817 RPS8P62241 208 aaKnown RBP12.9□□□□□ -0.34
CHFR-220ENST00000541817 OTUD7BQ6GQQ9 843 aa12.9□□□□□ -0.34
CHFR-220ENST00000541817 COPS6Q7L5N1 327 aa12.9□□□□□ -0.34
CHFR-220ENST00000541817 GGA1Q9UJY5 639 aa12.9□□□□□ -0.34
CHFR-220ENST00000541817 ZBTB48P10074 688 aaPredicted RBP12.89□□□□□ -0.35
CHFR-220ENST00000541817 XAGE3Q8WTP9 111 aa12.89□□□□□ -0.35
CHFR-220ENST00000541817 STXBP5LQ9Y2K9 1186 aa12.89□□□□□ -0.35
CHFR-220ENST00000541817 NR2E3Q9Y5X4 410 aa12.89□□□□□ -0.35
CHFR-220ENST00000541817 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
CHFR-220ENST00000541817 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.35
CHFR-220ENST00000541817 SF3B3Q15393 1217 aaKnown RBP12.88□□□□□ -0.35
CHFR-220ENST00000541817 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.88□□□□□ -0.35
CHFR-220ENST00000541817 HTATIP2Q9BUP3 242 aa12.88□□□□□ -0.35
CHFR-220ENST00000541817 RAPGEFL1Q9UHV5 662 aa12.88□□□□□ -0.35
CHFR-220ENST00000541817 SSC5DA1L4H1 1573 aa12.88□□□□□ -0.35
CHFR-220ENST00000541817 LAMB1P07942 1786 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 ATP5J2-PTCD1G3V325 749 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 EIF4G2P78344 907 aaKnown RBP eCLIP12.87□□□□□ -0.35
CHFR-220ENST00000541817 TAF1CQ15572 869 aaPredicted RBP12.87□□□□□ -0.35
CHFR-220ENST00000541817 HSP90AB3PQ58FF7 597 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 OGFOD1Q8N543 542 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 CNKSR2Q8WXI2 1034 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 PRDM6Q9NQX0 595 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 MTMR10Q9NXD2 777 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 PODXL2Q9NZ53 605 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 PCDHAC2Q9Y5I4 1007 aa12.87□□□□□ -0.35
CHFR-220ENST00000541817 DLG5Q8TDM6 1919 aa12.86□□□□□ -0.35
CHFR-220ENST00000541817 ZNF646O15015 1829 aaPredicted RBP12.86□□□□□ -0.35
CHFR-220ENST00000541817 HTATSF1O43719 755 aaKnown RBP12.86□□□□□ -0.35
CHFR-220ENST00000541817 DACT2Q5SW24 774 aa12.86□□□□□ -0.35
CHFR-220ENST00000541817 UBE2Q1Q7Z7E8 422 aa12.86□□□□□ -0.35
CHFR-220ENST00000541817 APOBEC3FQ8IUX4 373 aaKnown RBP12.86□□□□□ -0.35
CHFR-220ENST00000541817 CCDC85AQ96PX6 553 aaPredicted RBP12.86□□□□□ -0.35
CHFR-220ENST00000541817 DEFB129Q9H1M3 183 aa12.86□□□□□ -0.35
CHFR-220ENST00000541817 ELP3Q9H9T3 547 aa12.86□□□□□ -0.35
CHFR-220ENST00000541817 A0A1W2PPC1 479 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 PER1O15534 1290 aaPredicted RBP12.85□□□□□ -0.35
CHFR-220ENST00000541817 EVI5O60447 810 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 USP2O75604 605 aaPredicted RBP12.85□□□□□ -0.35
CHFR-220ENST00000541817 ARHGEF6Q15052 776 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 MAP3K11Q16584 847 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 NBPF12Q5TAG4 269 aaPredicted RBP12.85□□□□□ -0.35
CHFR-220ENST00000541817 KIAA0825Q8IV33 1275 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 PNISRQ8TF01 805 aaKnown RBP12.85□□□□□ -0.35
CHFR-220ENST00000541817 OPTNQ96CV9 577 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 ZFYVE28Q9HCC9 887 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 ERBB4Q15303 1308 aa12.85□□□□□ -0.35
CHFR-220ENST00000541817 LAMA3Q16787 3333 aa12.84□□□□□ -0.35
CHFR-220ENST00000541817 TESPA1A2RU30 521 aaPredicted RBP12.84□□□□□ -0.35
CHFR-220ENST00000541817 IRS4O14654 1257 aaPredicted RBP12.84□□□□□ -0.35
CHFR-220ENST00000541817 PPP1R12BO60237 982 aaPredicted RBP12.84□□□□□ -0.35
CHFR-220ENST00000541817 CCL5P13501 91 aa12.84□□□□□ -0.35
CHFR-220ENST00000541817 PODNQ7Z5L7 613 aa12.84□□□□□ -0.35
CHFR-220ENST00000541817 FAM43AQ8N2R8 423 aa12.84□□□□□ -0.35
CHFR-220ENST00000541817 BRI3BPQ8WY22 251 aa12.84□□□□□ -0.35
CHFR-220ENST00000541817 MS4A4AQ96JQ5 239 aa12.84□□□□□ -0.35
CHFR-220ENST00000541817 CLRN2A0PK11 232 aa12.83□□□□□ -0.36
CHFR-220ENST00000541817 FARP2O94887 1054 aaPredicted RBP12.83□□□□□ -0.36
CHFR-220ENST00000541817 CTGFP29279 349 aa12.83□□□□□ -0.36
CHFR-220ENST00000541817 GJA8P48165 433 aa12.83□□□□□ -0.36
CHFR-220ENST00000541817 BCAMP50895 628 aa12.83□□□□□ -0.36
CHFR-220ENST00000541817 ANKRD13DQ6ZTN6 518 aa12.83□□□□□ -0.36
CHFR-220ENST00000541817 JARID2Q92833 1246 aaPredicted RBP12.83□□□□□ -0.36
CHFR-220ENST00000541817 RNF208Q9H0X6 261 aa12.83□□□□□ -0.36
CHFR-220ENST00000541817 CCL15-CCL14A0A0B4J2E2 113 aa12.82□□□□□ -0.36
CHFR-220ENST00000541817 COL9A1P20849 921 aa12.82□□□□□ -0.36
CHFR-220ENST00000541817 CCL15Q16663 113 aa12.82□□□□□ -0.36
CHFR-220ENST00000541817 BIN2Q9UBW5 565 aaPredicted RBP12.82□□□□□ -0.36
CHFR-220ENST00000541817 AOX1Q06278 1338 aa12.82□□□□□ -0.36
CHFR-220ENST00000541817 ALPK3Q96L96 1907 aa12.82□□□□□ -0.36
CHFR-220ENST00000541817 OTOFQ9HC10 1997 aa12.81□□□□□ -0.36
CHFR-220ENST00000541817 CENPBP07199 599 aaPredicted RBP12.81□□□□□ -0.36
CHFR-220ENST00000541817 LACTBP83111 547 aaPredicted RBP12.81□□□□□ -0.36
CHFR-220ENST00000541817 KIF22Q14807 665 aa12.81□□□□□ -0.36
CHFR-220ENST00000541817 NKX2-3Q8TAU0 364 aa12.81□□□□□ -0.36
CHFR-220ENST00000541817 ZBED3Q96IU2 234 aaPredicted RBP12.81□□□□□ -0.36
CHFR-220ENST00000541817 ZMYND8Q9ULU4 1186 aaPredicted RBP12.81□□□□□ -0.36
CHFR-220ENST00000541817 NUDCQ9Y266 331 aa12.81□□□□□ -0.36
CHFR-220ENST00000541817 GJB1P08034 283 aa12.8□□□□□ -0.36
CHFR-220ENST00000541817 ATP2B4P23634 1241 aa12.8□□□□□ -0.36
CHFR-220ENST00000541817 GRK4P32298 578 aa12.8□□□□□ -0.36
CHFR-220ENST00000541817 IREB2P48200 963 aaKnown RBP12.8□□□□□ -0.36
CHFR-220ENST00000541817 TXNRD3Q86VQ6 643 aa12.8□□□□□ -0.36
CHFR-220ENST00000541817 ANKRD13AQ8IZ07 590 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms