RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 TSPY26PQ9H489 355 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 EIF2S2P20042 333 aaKnown RBP12.46□□□□□ -0.41
CHFR-219ENST00000541341 UTP14CQ5TAP6 766 aaKnown RBP12.46□□□□□ -0.41
CHFR-219ENST00000541341 PAXIP1Q6ZW49 1069 aaPredicted RBP12.46□□□□□ -0.41
CHFR-219ENST00000541341 CNTROBQ8N137 903 aa12.46□□□□□ -0.41
CHFR-219ENST00000541341 IL17RAQ96F46 866 aa12.46□□□□□ -0.41
CHFR-219ENST00000541341 DIAPH3Q9NSV4 1193 aa12.46□□□□□ -0.41
CHFR-219ENST00000541341 ABT1Q9ULW3 272 aaKnown RBP12.46□□□□□ -0.41
CHFR-219ENST00000541341 DDX60Q8IY21 1712 aaKnown RBP12.45□□□□□ -0.42
CHFR-219ENST00000541341 AOX1Q06278 1338 aa12.45□□□□□ -0.42
CHFR-219ENST00000541341 WDR33Q9C0J8 1336 aaKnown RBP12.45□□□□□ -0.42
CHFR-219ENST00000541341 FZD9O00144 591 aa12.45□□□□□ -0.42
CHFR-219ENST00000541341 TAF3Q5VWG9 929 aa12.45□□□□□ -0.42
CHFR-219ENST00000541341 JDP2Q8WYK2 163 aa12.45□□□□□ -0.42
CHFR-219ENST00000541341 NYXQ9GZU5 481 aa12.45□□□□□ -0.42
CHFR-219ENST00000541341 SNED1Q8TER0 1413 aa12.45□□□□□ -0.42
CHFR-219ENST00000541341 UQCRHLA0A096LP55 91 aa12.44□□□□□ -0.42
CHFR-219ENST00000541341 PPEF1O14829 653 aaPredicted RBP12.44□□□□□ -0.42
CHFR-219ENST00000541341 UQCRHP07919 91 aa12.44□□□□□ -0.42
CHFR-219ENST00000541341 EPS15P42566 896 aa12.44□□□□□ -0.42
CHFR-219ENST00000541341 LBX1P52954 281 aa12.44□□□□□ -0.42
CHFR-219ENST00000541341 EIF6P56537 245 aaKnown RBP12.44□□□□□ -0.42
CHFR-219ENST00000541341 PROSER3Q2NL68 480 aa12.44□□□□□ -0.42
CHFR-219ENST00000541341 LARGE2Q8N3Y3 721 aa12.44□□□□□ -0.42
CHFR-219ENST00000541341 AIDAQ96BJ3 306 aa12.44□□□□□ -0.42
CHFR-219ENST00000541341 CASP8AP2Q9UKL3 1982 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 TRAF5O00463 557 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 ELL2O00472 640 aaPredicted RBP12.43□□□□□ -0.42
CHFR-219ENST00000541341 PRPF40AO75400 957 aaKnown RBP12.43□□□□□ -0.42
CHFR-219ENST00000541341 NTSR2O95665 410 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 CCT4P50991 539 aaKnown RBP12.43□□□□□ -0.42
CHFR-219ENST00000541341 PDIA6Q15084 440 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 DEFB115Q30KQ5 88 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 HDGFL1Q5TGJ6 251 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 CCDC30Q5VVM6 783 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 LRP10Q7Z4F1 713 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 GPC2Q8N158 579 aa12.43□□□□□ -0.42
CHFR-219ENST00000541341 RBM17Q96I25 401 aaKnown RBP12.43□□□□□ -0.42
CHFR-219ENST00000541341 R3HCC1Q9Y3T6 440 aaKnown RBP12.43□□□□□ -0.42
CHFR-219ENST00000541341 SPEF2Q9C093 1822 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 ERVV-1B6SEH8 477 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 LMOD1P29536 600 aaPredicted RBP12.42□□□□□ -0.42
CHFR-219ENST00000541341 GTF2F1P35269 517 aaKnown RBP eCLIP12.42□□□□□ -0.422e-6■□□□□ 10.5
CHFR-219ENST00000541341 AIMP1Q12904 312 aaKnown RBP12.42□□□□□ -0.42
CHFR-219ENST00000541341 CUL4AQ13619 759 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 AOC3Q16853 763 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 CRY2Q49AN0 593 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 ZNF34Q8IZ26 560 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 PDCL2Q8N4E4 241 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 MYRIPQ8NFW9 859 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 CCDC94Q9BW85 323 aaPredicted RBP12.42□□□□□ -0.42
CHFR-219ENST00000541341 GTPBP4Q9BZE4 634 aaKnown RBP12.42□□□□□ -0.42
CHFR-219ENST00000541341 DDX21Q9NR30 783 aaKnown RBP eCLIP12.42□□□□□ -0.42
CHFR-219ENST00000541341 DBF4Q9UBU7 674 aaPredicted RBP12.42□□□□□ -0.42
CHFR-219ENST00000541341 TSKSQ9UJT2 592 aa12.42□□□□□ -0.42
CHFR-219ENST00000541341 PPIP5K2O43314 1243 aa12.41□□□□□ -0.42
CHFR-219ENST00000541341 SCNN1DP51172 638 aa12.41□□□□□ -0.42
CHFR-219ENST00000541341 PNMA8AQ86V59 439 aaPredicted RBP12.41□□□□□ -0.42
CHFR-219ENST00000541341 NIM1KQ8IY84 436 aa12.41□□□□□ -0.42
CHFR-219ENST00000541341 TMEM87AQ8NBN3 555 aa12.41□□□□□ -0.42
CHFR-219ENST00000541341 PSMD1Q99460 953 aa12.41□□□□□ -0.42
CHFR-219ENST00000541341 USP25Q9UHP3 1055 aa12.41□□□□□ -0.42
CHFR-219ENST00000541341 COL4A1P02462 1669 aa12.41□□□□□ -0.42
CHFR-219ENST00000541341 RIC1Q4ADV7 1423 aa12.4□□□□□ -0.42
CHFR-219ENST00000541341 BRD1O95696 1058 aa12.4□□□□□ -0.42
CHFR-219ENST00000541341 HCLS1P14317 486 aaPredicted RBP12.4□□□□□ -0.42
CHFR-219ENST00000541341 CTCFP49711 727 aaPredicted RBP12.4□□□□□ -0.42
CHFR-219ENST00000541341 CYP4F22Q6NT55 531 aa12.4□□□□□ -0.42
CHFR-219ENST00000541341 GIGYF2Q6Y7W6 1299 aaKnown RBP12.4□□□□□ -0.42
CHFR-219ENST00000541341 RBSNQ9H1K0 784 aa12.4□□□□□ -0.42
CHFR-219ENST00000541341 CHPF2Q9P2E5 772 aa12.4□□□□□ -0.42
CHFR-219ENST00000541341 HDAC5Q9UQL6 1122 aa12.4□□□□□ -0.42
CHFR-219ENST00000541341 KIF20AO95235 890 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 CAVIN2O95810 425 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 GNAI3P08754 354 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 HOXA10P31260 410 aaPredicted RBP12.39□□□□□ -0.43
CHFR-219ENST00000541341 FAM193AP78312 1265 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 SYCP1Q15431 976 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 DNTTIP2Q5QJE6 756 aaKnown RBP12.39□□□□□ -0.43
CHFR-219ENST00000541341 PPP1R42Q7Z4L9 355 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 PIBF1Q8WXW3 757 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 NLRP3Q96P20 1036 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 STK31Q9BXU1 1019 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 ZNF408Q9H9D4 720 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 HYPKQ9NX55 129 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 WBP1LQ9NX94 342 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 FAM13BQ9NYF5 915 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.39□□□□□ -0.43
CHFR-219ENST00000541341 THSD7BQ9C0I4 1608 aa12.39□□□□□ -0.43
CHFR-219ENST00000541341 SHTN1A0MZ66 631 aa12.38□□□□□ -0.43
CHFR-219ENST00000541341 RASSF10A6NK89 507 aa12.38□□□□□ -0.43
CHFR-219ENST00000541341 RGL2O15211 777 aa12.38□□□□□ -0.43
CHFR-219ENST00000541341 AOC2O75106 756 aa12.38□□□□□ -0.43
CHFR-219ENST00000541341 HSPA8P11142 646 aaKnown RBP12.38□□□□□ -0.43
CHFR-219ENST00000541341 DHX8Q14562 1220 aaKnown RBP12.38□□□□□ -0.43
CHFR-219ENST00000541341 CCDC183Q5T5S1 534 aa12.38□□□□□ -0.43
CHFR-219ENST00000541341 COPS6Q7L5N1 327 aa12.38□□□□□ -0.43
CHFR-219ENST00000541341 CRAMP1Q96RY5 1269 aa12.38□□□□□ -0.43
CHFR-219ENST00000541341 UTP14AQ9BVJ6 771 aaKnown RBP12.38□□□□□ -0.43
CHFR-219ENST00000541341 LRRC37AA6NMS7 1700 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms