RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 PPP1R1BQ9UD71 204 aaPredicted RBP17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 BRD1O95696 1058 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 MMP10P09238 476 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 ZBTB38Q8NAP3 1195 aaPredicted RBP17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 ERVV-1B6SEH8 477 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 MCM2P49736 904 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 UTP14AQ9BVJ6 771 aaKnown RBP17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 CNPY2Q9Y2B0 182 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 MBD3O95983 291 aa17.03■□□□□ 0.32
SFSWAP-210ENST00000541286 NOLC1Q14978 699 aaKnown RBP eCLIP17.03■□□□□ 0.32
SFSWAP-210ENST00000541286 TSPY26PQ9H489 355 aa17.03■□□□□ 0.32
SFSWAP-210ENST00000541286 DIAPH3Q9NSV4 1193 aa17.03■□□□□ 0.32
SFSWAP-210ENST00000541286 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
SFSWAP-210ENST00000541286 C4AP0C0L4 1744 aa17.03■□□□□ 0.32
SFSWAP-210ENST00000541286 IBTKQ9P2D0 1353 aaPredicted RBP17.03■□□□□ 0.32
SFSWAP-210ENST00000541286 HS1BP3Q53T59 392 aa17.02■□□□□ 0.32
SFSWAP-210ENST00000541286 RASEFQ8IZ41 740 aa17.02■□□□□ 0.32
SFSWAP-210ENST00000541286 TUBGCP6Q96RT7 1819 aa17.02■□□□□ 0.32
SFSWAP-210ENST00000541286 CASTP20810 708 aaKnown RBP17.02■□□□□ 0.32
SFSWAP-210ENST00000541286 MYRIPQ8NFW9 859 aa17.02■□□□□ 0.32
SFSWAP-210ENST00000541286 TLR7Q9NYK1 1049 aaKnown RBP17.02■□□□□ 0.32
SFSWAP-210ENST00000541286 VPS37CA5D8V6 355 aaPredicted RBP17.02■□□□□ 0.31
SFSWAP-210ENST00000541286 TTLL11Q8NHH1 800 aa17.02■□□□□ 0.31
SFSWAP-210ENST00000541286 SH3TC1Q8TE82 1336 aa17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 CCDC83Q8IWF9 413 aa17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 STK32BQ9NY57 414 aa17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 ZNF771Q7L3S4 317 aaPredicted RBP17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 MTERF4Q7Z6M4 381 aaKnown RBP17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 SYAP1Q96A49 352 aaPredicted RBP17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 TCEANC2Q96MN5 208 aa17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 SMC3Q9UQE7 1217 aa17.01■□□□□ 0.31
SFSWAP-210ENST00000541286 TAF5LO75529 589 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 SERPINB2P05120 415 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 PCCAP05165 728 aaPredicted RBP17■□□□□ 0.31
SFSWAP-210ENST00000541286 ITGA6P23229 1130 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 AK2P54819 239 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 PTPN12Q05209 780 aaKnown RBP17■□□□□ 0.31
SFSWAP-210ENST00000541286 CNTROBQ8N137 903 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 CCDC8Q9H0W5 538 aaPredicted RBP17■□□□□ 0.31
SFSWAP-210ENST00000541286 PRPF40BQ6NWY9 871 aaKnown RBP17■□□□□ 0.31
SFSWAP-210ENST00000541286 ZNF652Q9Y2D9 606 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 PXDNLA1KZ92 1463 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 PRR5LQ6MZQ0 368 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 KIF3AQ9Y496 699 aa17■□□□□ 0.31
SFSWAP-210ENST00000541286 SASH1O94885 1247 aa16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 RFX5P48382 616 aaPredicted RBP16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 SSH3Q8TE77 659 aa16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 JAKMIP1Q96N16 626 aaKnown RBP16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 GPR101Q96P66 508 aaPredicted RBP16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 UTYO14607 1347 aa16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 WDR33Q9C0J8 1336 aaKnown RBP16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 NAA30Q147X3 362 aaPredicted RBP16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 PDCL2Q8N4E4 241 aa16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 CELF1Q92879 486 aaKnown RBP16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 KIF1BPQ96EK5 621 aa16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 SNX14Q9Y5W7 946 aa16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 SALL3Q9BXA9 1300 aa16.99■□□□□ 0.31
SFSWAP-210ENST00000541286 ADCY5O95622 1261 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 CTSWP56202 376 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 FERMT3Q86UX7 667 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 NECAB1Q8N987 351 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 IFIT2P09913 472 aaKnown RBP16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 TIMM10P62072 90 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 TFCP2Q12800 502 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 CUL4AQ13619 759 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 CLASRPQ8N2M8 674 aaKnown RBP16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 CNBD1Q8NA66 436 aa16.98■□□□□ 0.31
SFSWAP-210ENST00000541286 POLRMTO00411 1230 aaKnown RBP16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 ANAPC15P60006 121 aa16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 TRIM28Q13263 835 aaKnown RBP16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 HSP90AB3PQ58FF7 597 aa16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 CHRNA5P30532 468 aa16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 HSPA4P34932 840 aa16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 POLA2Q14181 598 aa16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 TRERF1Q96PN7 1200 aa16.97■□□□□ 0.31
SFSWAP-210ENST00000541286 LARGE1O95461 756 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 STAP2Q9UGK3 403 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 RREB1Q92766 1687 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 SGSM2O43147 1006 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 CHGBP05060 677 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 TAF7LQ5H9L4 462 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 AACSQ86V21 672 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 SYT1P21579 422 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 TM4SF1P30408 202 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 CCDC57Q2TAC2 916 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 CLEC4GQ6UXB4 293 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 PI4K2BQ8TCG2 481 aa16.96■□□□□ 0.31
SFSWAP-210ENST00000541286 PTH1RQ03431 593 aa16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 ADCK5Q3MIX3 580 aa16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 GIMAP6Q6P9H5 292 aa16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 EDC3Q96F86 508 aaKnown RBP16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 INTS4Q96HW7 963 aaKnown RBP16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 RIOK3O14730 519 aaKnown RBP16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 STX6O43752 255 aa16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 FAM173BQ6P4H8 233 aa16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 RUFY3Q7L099 469 aa16.95■□□□□ 0.3
SFSWAP-210ENST00000541286 TPTE2Q6XPS3 522 aa16.94■□□□□ 0.3
SFSWAP-210ENST00000541286 IQSEC3Q9UPP2 1182 aaPredicted RBP16.94■□□□□ 0.3
SFSWAP-210ENST00000541286 LIMCH1Q9UPQ0 1083 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms