RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 ZNF646O15015 1829 aaPredicted RBP10.65□□□□□ -0.71
CHD4-208ENST00000540960 DUOX1Q9NRD9 1551 aa10.65□□□□□ -0.71
CHD4-208ENST00000540960 GNAI1P63096 354 aa10.64□□□□□ -0.71
CHD4-208ENST00000540960 NEUROD2Q15784 382 aa10.64□□□□□ -0.71
CHD4-208ENST00000540960 LRIT3Q3SXY7 679 aa10.64□□□□□ -0.71
CHD4-208ENST00000540960 CHMP4BQ9H444 224 aaKnown RBP10.64□□□□□ -0.71
CHD4-208ENST00000540960 CACNA1AO00555 2505 aa10.64□□□□□ -0.71
CHD4-208ENST00000540960 NUP98P52948 1817 aa10.63□□□□□ -0.71
CHD4-208ENST00000540960 NBPF26B4DH59 902 aa10.63□□□□□ -0.71
CHD4-208ENST00000540960 TNFRSF10AO00220 468 aa10.63□□□□□ -0.71
CHD4-208ENST00000540960 IPO8O15397 1037 aaKnown RBP10.63□□□□□ -0.71
CHD4-208ENST00000540960 HTATSF1O43719 755 aaKnown RBP10.63□□□□□ -0.71
CHD4-208ENST00000540960 BMP8BP34820 402 aa10.63□□□□□ -0.71
CHD4-208ENST00000540960 NBPF10Q6P3W6 841 aaKnown RBP10.63□□□□□ -0.71
CHD4-208ENST00000540960 LAMB1P07942 1786 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 ABCC4O15439 1325 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 RIMBP2O15034 1052 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 EVI5O60447 810 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 RPS12P25398 132 aaKnown RBP10.62□□□□□ -0.71
CHD4-208ENST00000540960 TCIRG1Q13488 830 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 GAS2L2Q8NHY3 880 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 PTPN18Q99952 460 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 ARHGAP39Q9C0H5 1083 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 IFT57Q9NWB7 429 aa10.62□□□□□ -0.71
CHD4-208ENST00000540960 IRS2Q9Y4H2 1338 aa10.61□□□□□ -0.71
CHD4-208ENST00000540960 MANSC4A6NHS7 340 aaPredicted RBP10.61□□□□□ -0.71
CHD4-208ENST00000540960 DOK7Q18PE1 504 aa10.61□□□□□ -0.71
CHD4-208ENST00000540960 MTHFSDQ2M296 383 aaKnown RBP10.61□□□□□ -0.71
CHD4-208ENST00000540960 LDLRAD1Q5T700 205 aa10.61□□□□□ -0.71
CHD4-208ENST00000540960 SUSD4Q5VX71 490 aa10.61□□□□□ -0.71
CHD4-208ENST00000540960 SP8Q8IXZ3 490 aa10.61□□□□□ -0.71
CHD4-208ENST00000540960 TMX4Q9H1E5 349 aaPredicted RBP10.61□□□□□ -0.71
CHD4-208ENST00000540960 SIPA1L3O60292 1781 aaPredicted RBP10.61□□□□□ -0.71
CHD4-208ENST00000540960 POTEB2H3BUK9 544 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 GJA8P48165 433 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 INHBEP58166 350 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 ALDH1L2Q3SY69 923 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 RTF1Q92541 710 aaKnown RBP10.6□□□□□ -0.71
CHD4-208ENST00000540960 CLMNQ96JQ2 1002 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 FMNL2Q96PY5 1086 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 NYXQ9GZU5 481 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 RRP7AQ9Y3A4 280 aaKnown RBP10.6□□□□□ -0.71
CHD4-208ENST00000540960 LAMB2P55268 1798 aa10.6□□□□□ -0.71
CHD4-208ENST00000540960 UBN2Q6ZU65 1347 aa10.59□□□□□ -0.71
CHD4-208ENST00000540960 SYNGAP1Q96PV0 1343 aa10.59□□□□□ -0.71
CHD4-208ENST00000540960 GPTP24298 496 aa10.59□□□□□ -0.71
CHD4-208ENST00000540960 ZNF280AP59817 542 aaPredicted RBP10.59□□□□□ -0.71
CHD4-208ENST00000540960 SYMPKQ92797 1274 aaKnown RBP10.59□□□□□ -0.71
CHD4-208ENST00000540960 BABAM1Q9NWV8 329 aa10.59□□□□□ -0.71
CHD4-208ENST00000540960 ZMYND8Q9ULU4 1186 aaPredicted RBP10.59□□□□□ -0.71
CHD4-208ENST00000540960 TRIM35Q9UPQ4 493 aa10.59□□□□□ -0.71
CHD4-208ENST00000540960 KIF16BQ96L93 1317 aa10.58□□□□□ -0.71
CHD4-208ENST00000540960 ECE2O60344 883 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 FARP2O94887 1054 aaPredicted RBP10.58□□□□□ -0.72
CHD4-208ENST00000540960 VIL1P09327 827 aaKnown RBP10.58□□□□□ -0.72
CHD4-208ENST00000540960 HMOX1P09601 288 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 GJA5P36382 358 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 IRX6P78412 446 aaPredicted RBP10.58□□□□□ -0.72
CHD4-208ENST00000540960 WASHC4Q2M389 1173 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 NBPF9Q3BBW0 867 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 TDHQ8IZJ6 230 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 IL17REQ8NFR9 667 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 MAFAQ8NHW3 353 aaPredicted RBP10.58□□□□□ -0.72
CHD4-208ENST00000540960 WNK4Q96J92 1243 aa10.58□□□□□ -0.72
CHD4-208ENST00000540960 ANGEL1Q9UNK9 670 aaKnown RBP10.58□□□□□ -0.72
CHD4-208ENST00000540960 GJB1P08034 283 aa10.57□□□□□ -0.72
CHD4-208ENST00000540960 RARSP54136 660 aaKnown RBP10.57□□□□□ -0.72
CHD4-208ENST00000540960 SLC10A4Q96EP9 437 aa10.57□□□□□ -0.72
CHD4-208ENST00000540960 FANCIQ9NVI1 1328 aa10.57□□□□□ -0.72
CHD4-208ENST00000540960 RGL2O15211 777 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 BBOX1O75936 387 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 NTSR2O95665 410 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 CCL5P13501 91 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 SYN1P17600 705 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 MAGEA10P43363 369 aaPredicted RBP10.56□□□□□ -0.72
CHD4-208ENST00000540960 ARMC9Q7Z3E5 817 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 NKX2-3Q8TAU0 364 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 CDX2Q99626 313 aaPredicted RBP10.56□□□□□ -0.72
CHD4-208ENST00000540960 MYOZ2Q9NPC6 264 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 POLLQ9UGP5 575 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 PIEZO1Q92508 2521 aa10.56□□□□□ -0.72
CHD4-208ENST00000540960 ZKSCAN2Q63HK3 967 aa10.55□□□□□ -0.72
CHD4-208ENST00000540960 FAM109BQ6ICB4 259 aaPredicted RBP10.55□□□□□ -0.72
CHD4-208ENST00000540960 ALYREFQ86V81 257 aaKnown RBP10.55□□□□□ -0.72
CHD4-208ENST00000540960 ARHGAP45Q92619 1136 aa10.55□□□□□ -0.72
CHD4-208ENST00000540960 NLRP3Q96P20 1036 aa10.55□□□□□ -0.72
CHD4-208ENST00000540960 RNF208Q9H0X6 261 aa10.55□□□□□ -0.72
CHD4-208ENST00000540960 DDX60Q8IY21 1712 aaKnown RBP10.55□□□□□ -0.72
CHD4-208ENST00000540960 SSC5DA1L4H1 1573 aa10.54□□□□□ -0.72
CHD4-208ENST00000540960 LRRC37AA6NMS7 1700 aa10.54□□□□□ -0.72
CHD4-208ENST00000540960 ZBTB48P10074 688 aaPredicted RBP10.54□□□□□ -0.72
CHD4-208ENST00000540960 NF2P35240 595 aa10.54□□□□□ -0.72
CHD4-208ENST00000540960 CENPQQ7L2Z9 268 aaPredicted RBP10.54□□□□□ -0.72
CHD4-208ENST00000540960 C7orf61Q8IZ16 206 aa10.54□□□□□ -0.72
CHD4-208ENST00000540960 U2AF1L4Q8WU68 220 aaKnown RBP10.54□□□□□ -0.72
CHD4-208ENST00000540960 PHACTR3Q96KR7 559 aa10.54□□□□□ -0.72
CHD4-208ENST00000540960 GMLQ99445 158 aa10.54□□□□□ -0.72
CHD4-208ENST00000540960 SPINK5Q9NQ38 1064 aaPredicted RBP10.54□□□□□ -0.72
CHD4-208ENST00000540960 ANKRD36CQ5JPF3 1778 aa10.54□□□□□ -0.72
CHD4-208ENST00000540960 COL4A1P02462 1669 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms