RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 UBE2Q2Q8WVN8 375 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 RBM8AQ9Y5S9 174 aaKnown RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 COL14A1Q05707 1796 aaKnown RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 PTH1RQ03431 593 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 SYNE4Q8N205 404 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 ZHX1Q9UKY1 873 aaPredicted RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 SNX14Q9Y5W7 946 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 CCDC171Q6TFL3 1326 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 DHX16O60231 1041 aaKnown RBP11.68□□□□□ -0.54
TRAF1-202ENST00000540010 NLRP10Q86W26 655 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 TTC12Q9H892 705 aaPredicted RBP11.68□□□□□ -0.54
TRAF1-202ENST00000540010 SNRKQ9NRH2 765 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 TRMT1Q9NXH9 659 aaKnown RBP11.68□□□□□ -0.54
TRAF1-202ENST00000540010 CFAP45Q9UL16 551 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 KCPQ6ZWJ8 1503 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 SPATA31A5Q5VU36 1347 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 SPATA31A7Q8IWB4 1347 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 ERICH4A6NGS2 130 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 EPB41L2O43491 1005 aaKnown RBP11.68□□□□□ -0.54
TRAF1-202ENST00000540010 STX6O43752 255 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 CRKLP46109 303 aaKnown RBP11.68□□□□□ -0.54
TRAF1-202ENST00000540010 RAB3GAP1Q15042 981 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 TNS2Q63HR2 1409 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 A0A0D9SFI3 127 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 SPDYE4A6NLX3 237 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 ITGA6P23229 1130 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 SLC4A9Q96Q91 983 aa11.68□□□□□ -0.54
TRAF1-202ENST00000540010 AEBP2Q6ZN18 517 aaPredicted RBP11.67□□□□□ -0.54
TRAF1-202ENST00000540010 TRIM28Q13263 835 aaKnown RBP11.67□□□□□ -0.54
TRAF1-202ENST00000540010 CEP57L1Q8IYX8 460 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 PAG1Q9NWQ8 432 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 ABCA3Q99758 1704 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 DTNBO60941 627 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 CPA1P15085 419 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 CCDC70Q6NSX1 233 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 LRSAM1Q6UWE0 723 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 NECAB1Q8N987 351 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 MPHOSPH8Q99549 860 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 USP21Q9UK80 565 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 N4BP2Q86UW6 1770 aaPredicted RBP11.67□□□□□ -0.54
TRAF1-202ENST00000540010 KCNQ2O43526 872 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 NAP1L1P55209 391 aaKnown RBP11.67□□□□□ -0.54
TRAF1-202ENST00000540010 BICDL1Q6ZP65 573 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 RASEFQ8IZ41 740 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 NIP7Q9Y221 180 aaKnown RBP eCLIP11.67□□□□□ -0.54
TRAF1-202ENST00000540010 ZNF652Q9Y2D9 606 aa11.67□□□□□ -0.54
TRAF1-202ENST00000540010 GJB2P29033 226 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 CTSWP56202 376 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 ATP2B3Q16720 1220 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 ATG9AQ7Z3C6 839 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 GREM2Q9H772 168 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 DISP2A7MBM2 1401 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 AHDC1Q5TGY3 1603 aaPredicted RBP11.66□□□□□ -0.54
TRAF1-202ENST00000540010 CREB3L3Q68CJ9 461 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 HAUS7Q99871 368 aa11.66□□□□□ -0.54
TRAF1-202ENST00000540010 PDE8AO60658 829 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 UTP14AQ9BVJ6 771 aaKnown RBP11.65□□□□□ -0.54
TRAF1-202ENST00000540010 CNPY2Q9Y2B0 182 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 PALLDQ8WX93 1383 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 CCDC66A2RUB6 948 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 ERVV-1B6SEH8 477 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 CIAO1O76071 339 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 TNNT1P13805 278 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 PTPN14Q15678 1187 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 SCAND2PQ9GZW5 306 aaPredicted RBP11.65□□□□□ -0.54
TRAF1-202ENST00000540010 PHLPP1O60346 1717 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 SH3TC1Q8TE82 1336 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 AK2P54819 239 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 KCNQ4P56696 695 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 MCMDC2Q4G0Z9 681 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 CCDC129Q6ZRS4 1044 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 USP48Q86UV5 1035 aa11.65□□□□□ -0.54
TRAF1-202ENST00000540010 COL15A1P39059 1388 aa11.65□□□□□ -0.55
TRAF1-202ENST00000540010 CCT2P78371 535 aaKnown RBP11.64□□□□□ -0.55
TRAF1-202ENST00000540010 BARGINQ6ZT62 677 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 KBTBD3Q8NAB2 608 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 XAGE2Q96GT9 111 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 GPR108Q9NPR9 543 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 CLIP2Q9UDT6 1046 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 AFDNP55196 1824 aaKnown RBP11.64□□□□□ -0.55
TRAF1-202ENST00000540010 ZNF165P49910 485 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 CFAP100Q494V2 611 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 FAM182BQ5T319 152 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 TTLL11Q8NHH1 800 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 PPP4R3BQ5MIZ7 849 aa11.64□□□□□ -0.55
TRAF1-202ENST00000540010 HELBQ8NG08 1087 aaPredicted RBP11.64□□□□□ -0.55
TRAF1-202ENST00000540010 SEC62Q99442 399 aaKnown RBP11.64□□□□□ -0.55
TRAF1-202ENST00000540010 ZKSCAN5Q9Y2L8 839 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 JCADQ9P266 1359 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 PATL2C9JE40 543 aaKnown RBP11.63□□□□□ -0.55
TRAF1-202ENST00000540010 BIN1O00499 593 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 SLC27A2O14975 620 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 ADORA1P30542 326 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 KRT32Q14532 448 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 ZNF589Q86UQ0 364 aaPredicted RBP11.63□□□□□ -0.55
TRAF1-202ENST00000540010 UBXN4Q92575 508 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 U3KPZ7 1027 aaPredicted RBP11.63□□□□□ -0.55
TRAF1-202ENST00000540010 IGHMBP2P38935 993 aaKnown RBP11.63□□□□□ -0.55
TRAF1-202ENST00000540010 JMYQ8N9B5 988 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 LAMB4A4D0S4 1761 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms