RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 ARID4AP29374 1257 aaPredicted RBP20.34■□□□□ 0.85
COPS3-212ENST00000539941 HSPA4P34932 840 aa20.34■□□□□ 0.85
COPS3-212ENST00000539941 NLGN1Q8N2Q7 840 aa20.34■□□□□ 0.85
COPS3-212ENST00000539941 HELBQ8NG08 1087 aaPredicted RBP20.34■□□□□ 0.85
COPS3-212ENST00000539941 FAM227BQ96M60 508 aa20.34■□□□□ 0.85
COPS3-212ENST00000539941 SGIP1Q9BQI5 828 aa20.34■□□□□ 0.85
COPS3-212ENST00000539941 COL4A1P02462 1669 aa20.34■□□□□ 0.85
COPS3-212ENST00000539941 MTFR1LQ9H019 292 aa20.33■□□□□ 0.85
COPS3-212ENST00000539941 PPP1R1BQ9UD71 204 aaPredicted RBP20.33■□□□□ 0.85
COPS3-212ENST00000539941 A0A0D9SFI3 127 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 UBE4AQ14139 1066 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 CCDC102BQ68D86 513 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 FAM43AQ8N2R8 423 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 CELF1Q92879 486 aaKnown RBP20.32■□□□□ 0.84
COPS3-212ENST00000539941 NDUFB9Q9Y6M9 179 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 AKAP11Q9UKA4 1901 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 CCDC171Q6TFL3 1326 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 POLRMTO00411 1230 aaKnown RBP20.32■□□□□ 0.84
COPS3-212ENST00000539941 TAF5LO75529 589 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 SLC4A3P48751 1232 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 COL23A1Q86Y22 540 aaPredicted RBP20.32■□□□□ 0.84
COPS3-212ENST00000539941 MINPP1Q9UNW1 487 aa20.32■□□□□ 0.84
COPS3-212ENST00000539941 PNPLA7Q6ZV29 1317 aa20.31■□□□□ 0.84
COPS3-212ENST00000539941 TAF1P21675 1872 aa20.31■□□□□ 0.84
COPS3-212ENST00000539941 ZFYP08048 801 aaPredicted RBP20.31■□□□□ 0.84
COPS3-212ENST00000539941 FKBP4Q02790 459 aaKnown RBP eCLIP20.31■□□□□ 0.84
COPS3-212ENST00000539941 TTF1Q15361 905 aaPredicted RBP20.31■□□□□ 0.84
COPS3-212ENST00000539941 ANKRD2Q9GZV1 360 aa20.31■□□□□ 0.84
COPS3-212ENST00000539941 HELLSQ9NRZ9 838 aa20.31■□□□□ 0.84
COPS3-212ENST00000539941 MCAMP43121 646 aa20.3■□□□□ 0.84
COPS3-212ENST00000539941 DDR1Q08345 913 aa20.3■□□□□ 0.84
COPS3-212ENST00000539941 CRY2Q49AN0 593 aa20.3■□□□□ 0.84
COPS3-212ENST00000539941 CCDC24Q8N4L8 307 aa20.3■□□□□ 0.84
COPS3-212ENST00000539941 NRXN2Q9P2S2 1712 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 PHKA1P46020 1223 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 GRAPQ13588 217 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 SCARF1Q14162 830 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 MCMDC2Q4G0Z9 681 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 GRAPLQ8TC17 118 aaPredicted RBP20.29■□□□□ 0.84
COPS3-212ENST00000539941 QSER1Q2KHR3 1735 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 RNF113AO15541 343 aaKnown RBP20.29■□□□□ 0.84
COPS3-212ENST00000539941 ST18O60284 1047 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 ZAP70P43403 619 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 ZMYM1Q5SVZ6 1142 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 MAP4K1Q92918 833 aa20.29■□□□□ 0.84
COPS3-212ENST00000539941 SLC16A10Q8TF71 515 aa20.28■□□□□ 0.84
COPS3-212ENST00000539941 RPGRQ92834 1020 aaKnown RBP20.28■□□□□ 0.84
COPS3-212ENST00000539941 KCNB2Q92953 911 aa20.28■□□□□ 0.84
COPS3-212ENST00000539941 PKNOX2Q96KN3 472 aa20.28■□□□□ 0.84
COPS3-212ENST00000539941 ANTXR1Q9H6X2 564 aa20.28■□□□□ 0.84
COPS3-212ENST00000539941 MYH7P12883 1935 aa20.27■□□□□ 0.84
COPS3-212ENST00000539941 KLRG2A4D1S0 409 aaPredicted RBP20.27■□□□□ 0.84
COPS3-212ENST00000539941 PTH1RQ03431 593 aa20.27■□□□□ 0.84
COPS3-212ENST00000539941 ZSCAN25Q6NSZ9 544 aa20.27■□□□□ 0.84
COPS3-212ENST00000539941 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.27■□□□□ 0.84
COPS3-212ENST00000539941 PALD1Q9ULE6 856 aa20.27■□□□□ 0.84
COPS3-212ENST00000539941 ZNF804BA4D1E1 1349 aa20.26■□□□□ 0.83
COPS3-212ENST00000539941 K7ELQ4 463 aaPredicted RBP20.26■□□□□ 0.83
COPS3-212ENST00000539941 ZNF589Q86UQ0 364 aaPredicted RBP20.26■□□□□ 0.83
COPS3-212ENST00000539941 SPATA5Q8NB90 893 aa20.26■□□□□ 0.83
COPS3-212ENST00000539941 RBM17Q96I25 401 aaKnown RBP20.26■□□□□ 0.83
COPS3-212ENST00000539941 GNL3LQ9NVN8 582 aaKnown RBP20.26■□□□□ 0.83
COPS3-212ENST00000539941 SNAP23O00161 211 aa20.25■□□□□ 0.83
COPS3-212ENST00000539941 HOXA10P31260 410 aaPredicted RBP20.25■□□□□ 0.83
COPS3-212ENST00000539941 NECTIN1Q15223 517 aa20.25■□□□□ 0.83
COPS3-212ENST00000539941 HMG20BQ9P0W2 317 aa20.25■□□□□ 0.83
COPS3-212ENST00000539941 RBM8AQ9Y5S9 174 aaKnown RBP20.25■□□□□ 0.83
COPS3-212ENST00000539941 ZBTB22O15209 634 aa20.24■□□□□ 0.83
COPS3-212ENST00000539941 CYP2E1P05181 493 aaPredicted RBP20.24■□□□□ 0.83
COPS3-212ENST00000539941 MCM2P49736 904 aa20.24■□□□□ 0.83
COPS3-212ENST00000539941 PI16Q6UXB8 463 aa20.24■□□□□ 0.83
COPS3-212ENST00000539941 SNX14Q9Y5W7 946 aa20.24■□□□□ 0.83
COPS3-212ENST00000539941 KCNJ4P48050 445 aa20.23■□□□□ 0.83
COPS3-212ENST00000539941 BCAMP50895 628 aa20.23■□□□□ 0.83
COPS3-212ENST00000539941 RASGRF1Q13972 1273 aa20.23■□□□□ 0.83
COPS3-212ENST00000539941 CAVIN4Q5BKX8 364 aa20.23■□□□□ 0.83
COPS3-212ENST00000539941 RNF20Q5VTR2 975 aa20.23■□□□□ 0.83
COPS3-212ENST00000539941 BRIP1Q9BX63 1249 aa20.23■□□□□ 0.83
COPS3-212ENST00000539941 CD2BP2O95400 341 aaKnown RBP20.22■□□□□ 0.83
COPS3-212ENST00000539941 ZKSCAN1P17029 563 aaPredicted RBP20.22■□□□□ 0.83
COPS3-212ENST00000539941 APPBP2Q92624 585 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 CRAMP1Q96RY5 1269 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 SYT17Q9BSW7 474 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 FHDC1Q9C0D6 1143 aaPredicted RBP20.22■□□□□ 0.83
COPS3-212ENST00000539941 U3KPZ7 1027 aaPredicted RBP20.22■□□□□ 0.83
COPS3-212ENST00000539941 DOCK2Q92608 1830 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 SEMA3EO15041 775 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 BBOX1O75936 387 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 UBE3CQ15386 1083 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 TMC4Q7Z404 712 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 SEC62Q99442 399 aaKnown RBP20.22■□□□□ 0.83
COPS3-212ENST00000539941 DSCC1Q9BVC3 393 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 TM6SF1Q9BZW5 370 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 LEMD3Q9Y2U8 911 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 PARP3Q9Y6F1 533 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 MAST3O60307 1309 aa20.22■□□□□ 0.83
COPS3-212ENST00000539941 ADD2P35612 726 aa20.21■□□□□ 0.83
COPS3-212ENST00000539941 NEK4P51957 841 aa20.21■□□□□ 0.83
COPS3-212ENST00000539941 CREB3L3Q68CJ9 461 aa20.21■□□□□ 0.83
COPS3-212ENST00000539941 PRPF40BQ6NWY9 871 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms