RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-233	ENST00000535896	AKAP4	Q5JQC9	854 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	RNF20	Q5VTR2	975 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	KRT27	Q7Z3Y8	459 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	USHBP1	Q8N6Y0	703 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	UPF3B	Q9BZI7	483 aa	Known RBP	7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	HYPK	Q9NX55	129 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	DBF4	Q9UBU7	674 aa	Predicted RBP	7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	RABGEF1	Q9UJ41	708 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	R3HCC1	Q9Y3T6	440 aa	Known RBP	7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	CYP46A1	Q9Y6A2	500 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	BCL9	O00512	1426 aa		7.53	□□□□□ -1.2
SYNE1-233	ENST00000535896	C5	P01031	1676 aa		7.52	□□□□□ -1.2
SYNE1-233	ENST00000535896	MED23	Q9ULK4	1368 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	PCDH11X	Q9BZA7	1347 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	PCDH11Y	Q9BZA8	1340 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	BRWD3	Q6RI45	1802 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	PPP1R3G	B7ZBB8	358 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	KDM4A	O75164	1064 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	GIGYF1	O75420	1035 aa	Predicted RBP	7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	CCDC192	P0DO97	292 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	KRT85	P78386	507 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	KRT32	Q14532	448 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	RUFY3	Q7L099	469 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	CHMP4C	Q96CF2	233 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	SCAND2P	Q9GZW5	306 aa	Predicted RBP	7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	MIS18A	Q9NYP9	233 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	SPG7	Q9UQ90	795 aa		7.52	□□□□□ -1.21
SYNE1-233	ENST00000535896	ARFGEF2	Q9Y6D5	1785 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	DDX58	O95786	925 aa	Known RBP	7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	CAST	P20810	708 aa	Known RBP	7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	MAP3K9	P80192	1104 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	CHAF1A	Q13111	956 aa	Predicted RBP	7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	NECTIN1	Q15223	517 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	SYCP1	Q15431	976 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	PLEKHO1	Q53GL0	409 aa	Predicted RBP	7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	TSHZ3	Q63HK5	1081 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896		Q6ZNB5	142 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	RBM43	Q6ZSC3	357 aa	Known RBP	7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	LAPTM4B	Q86VI4	370 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	ZCRB1	Q8TBF4	217 aa	Known RBP	7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	FAM200A	Q8TCP9	573 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	PDRG1	Q9NUG6	133 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	DDX19A	Q9NUU7	478 aa	Known RBP	7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	MTMR6	Q9Y217	621 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	EP400	Q96L91	3159 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	LAMA4	Q16363	1823 aa		7.51	□□□□□ -1.21
SYNE1-233	ENST00000535896	DDX60	Q8IY21	1712 aa	Known RBP	7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	SHANK3	Q9BYB0	1731 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	TULP1	O00294	542 aa	Predicted RBP	7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	GADD45B	O75293	160 aa	Predicted RBP	7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	ADCY5	O95622	1261 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	IFIT2	P09913	472 aa	Known RBP	7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	GJB2	P29033	226 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	TEF	Q10587	303 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	NOLC1	Q14978	699 aa	Known RBP eCLIP	7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	LAPTM4A	Q15012	233 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	PROX2	Q3B8N5	592 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	KSR2	Q6VAB6	950 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	FAM196A	Q6ZSG2	479 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	SMAP1	Q8IYB5	467 aa	Predicted RBP	7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	RNF214	Q8ND24	703 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	LINS1	Q8NG48	757 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	MAP4K1	Q92918	833 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	IL25	Q9H293	177 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	IL1RAPL2	Q9NP60	686 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	CNPY2	Q9Y2B0	182 aa		7.5	□□□□□ -1.21
SYNE1-233	ENST00000535896	PI4KAP2	A4QPH2	592 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	NBPF7	P0C2Y1	421 aa	Predicted RBP	7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	BCAM	P50895	628 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	OS9	Q13438	667 aa	Predicted RBP	7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	DHX8	Q14562	1220 aa	Known RBP	7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	MAP3K11	Q16584	847 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	ATL3	Q6DD88	541 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	CWC27	Q6UX04	472 aa	Known RBP	7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	NUTM1	Q86Y26	1132 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	IFNL2	Q8IZJ0	200 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	PI4KAP1	Q8N8J0	262 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	RGS22	Q8NE09	1264 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	JAKMIP1	Q96N16	626 aa	Known RBP	7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	LARP6	Q9BRS8	491 aa	Known RBP	7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	PHAX	Q9H814	394 aa	Known RBP	7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	CHPF2	Q9P2E5	772 aa		7.49	□□□□□ -1.21
SYNE1-233	ENST00000535896	BTBD11	A6QL63	1104 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	HCLS1	P14317	486 aa	Predicted RBP	7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	COL9A1	P20849	921 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	CDC25B	P30305	580 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	C1orf141	Q5JVX7	400 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	USPL1	Q5W0Q7	1092 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	ZNF530	Q6P9A1	599 aa	Predicted RBP	7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	MARCH10	Q8NA82	808 aa	Predicted RBP	7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	KIAA1524	Q8TCG1	905 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	CCDC94	Q9BW85	323 aa	Predicted RBP	7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	NUP62CL	Q9H1M0	184 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	KIF3A	Q9Y496	699 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	PCDHGA10	Q9Y5H3	936 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	NUP188	Q5SRE5	1749 aa		7.48	□□□□□ -1.21
SYNE1-233	ENST00000535896	SOWAHB	A6NEL2	793 aa		7.47	□□□□□ -1.21

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